Figure 3.

Self comparison of (a) B6 proximal contig AL181738 to CR847872 and (b) distal contig BX001066 to AL683829. Genes and pseudogenes are annotated as in Figure 1. Loci that form isolated nodes in the phylogeny presented in Figure 2 are boxed in white; those genes and pseudogenes that form respective clades marked A and B in Figure 2 are boxed in gray.