Genome Biology

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GMODWeb: a web framework for the generic model organism database

Brian D O'Connor, Allen Day, Scott Cain, Olivier Arnaiz, Linda Sperling and Lincoln D Stein*

  • * Corresponding author: Lincoln D Stein lstein@cshl.edu

  • † Equal contributors

Genome Biology 2008, 9:R102 doi:10.1186/gb-2008-9-6-r102

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Proceedings   Open Access

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button

Morris A Swertz, Martijn Dijkstra, Tomasz Adamusiak, Joeri K van der Velde, Alexandros Kanterakis, Erik T Roos, Joris Lops, Gudmundur A Thorisson, Danny Arends, George Byelas, Juha Muilu, Anthony J Brookes, Engbert O de Brock, Ritsert C Jansen, Helen Parkinson BMC Bioinformatics 2010, 11(Suppl 12):S12 (21 December 2010)

Proceedings   Open Access

Next generation models for storage and representation of microbial biological annotation

Daniel J Quest, Miriam L Land, Thomas S Brettin, Robert W Cottingham BMC Bioinformatics 2010, 11(Suppl 6):S15 (7 October 2010)

Method   Open Access Highly Accessed

A standard variation file format for human genome sequences

Martin G Reese, Barry Moore, Colin Batchelor, Fidel Salas, Fiona Cunningham, Gabor T Marth, Lincoln Stein, Paul Flicek, Mark Yandell, Karen Eilbeck Genome Biology 2010, 11:R88 (26 August 2010)

The genome variation format (GVF) and the 10Gen dataset provide a resource for the standardization of variant files and data analysis.

Software   Open Access

XGAP: a uniform and extensible data model and software platform for genotype and phenotype experiments

Morris A Swertz, K Joeri Velde, Bruno M Tesson, Richard A Scheltema, Danny Arends, Gonzalo Vera, Rudi Alberts, Martijn Dijkstra, Paul Schofield, Klaus Schughart, John M Hancock, Damian Smedley, Katy Wolstencroft, Carole Goble, Engbert O de Brock, Andrew R Jones, Helen E Parkinson, Ritsert C Jansen Genome Biology 2010, 11:R27 (9 March 2010)

XGAP, a software platform for the integration and analysis of genotype and phenotype data.