Table 2 |
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|
The amount of genomic DNA in which methods agree (%) |
||||||
|
IsoFinder |
GC-Profile |
BASIO |
Least-squares |
Consensus |
Average* |
|
|
|
||||||
|
IsoFinder |
100.0 |
62.2 |
74.8 |
58.8 |
82.3 |
65.3 |
|
GC-Profile |
62.2 |
100.0 |
59.9 |
83.1 |
72.8 |
68.4 |
|
BASIO |
74.8 |
59.9 |
100.0 |
60.9 |
85.5 |
65.2 |
|
Least-squares |
58.8 |
83.1 |
60.9 |
100.0 |
73.7 |
67.6 |
|
Consensus |
82.3 |
72.8 |
85.5 |
73.7 |
100.0 |
78.6 |
|
|
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|
Percentage of the human genome classified into the same isochore families by each pair of methods. The amount of equally classified human DNA ranges from 59-86% in an all-against-all pairwise comparison. On average, all methods agree in about 66% of the genome. The consensus isochore map has the best agreement of 79%, on average, with all other methods. *The average agreement of the method in the respective row with all other methods except itself and the consensus isochore map. |
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|
Schmidt and Frishman Genome Biology 2008 9:R104 doi:10.1186/gb-2008-9-6-r104 |
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