Table 3 |
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|
Agreement on gene classification (%) |
||||||
|
IsoFinder |
GC-Profile |
BASIO |
Least-squares |
Consensus |
Average* |
|
|
|
||||||
|
IsoFinder |
100.0 |
53.1 |
76.5 |
50.7 |
81.1 |
60.1 |
|
GC-Profile |
53.1 |
100.0 |
54.6 |
83.8 |
68.9 |
63.8 |
|
BASIO |
76.5 |
54.6 |
100.0 |
52.6 |
83.7 |
61.2 |
|
Least-squares |
50.7 |
83.8 |
52.6 |
100.0 |
66.7 |
62.4 |
|
Consensus |
81.1 |
68.9 |
83.7 |
66.7 |
100.0 |
75.1 |
|
|
||||||
|
Percentage of genes that are classified equally by all methods. Between 50% and 84% of all genes are classified into the same isochore family by all methods. The consensus isochore map shows the greatest agreement with all other isochore maps on average. *The average agreement of the method in the respective row with all other methods except itself and the consensus isochore map. |
||||||
|
Schmidt and Frishman Genome Biology 2008 9:R104 doi:10.1186/gb-2008-9-6-r104 |
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