Table 7 |
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|
Database content |
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|
%DNA classified to isochore families in the consensus map |
Confidence‡ |
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|
|
|
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|
Genome |
No. of segments* |
L1 |
L2 |
H1 |
H2 |
H3 |
Am† |
Avg. |
SD |
|
|
|
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|
Bos taurus |
Cow |
48 |
8.6 |
45.1 |
28.4 |
11.9 |
3.44 |
0.14 |
2.6 |
0.70 |
|
Canis familiaris |
Dog |
36 |
25.8 |
32.5 |
20.3 |
11.3 |
5.05 |
0.16 |
2.6 |
0.71 |
|
Danio rerio |
Zebrafish |
22 |
76.6 |
20.4 |
1.9 |
0.4 |
0.12 |
0.23 |
2.6 |
0.74 |
|
Danio rerio |
Zebrafish |
22 |
78.1 |
20.1 |
1.4 |
0.3 |
0.08 |
0.04 |
2.6 |
0.76 |
|
Drosophila melanogaster |
Fruit fly |
1 |
2.6 |
20.5 |
70.8 |
5.7 |
0.06 |
0.02 |
2.6 |
0.76 |
|
Equus ferus caballus |
Horse |
32 |
22.1 |
37.7 |
22.8 |
12.5 |
4.57 |
0.16 |
2.6 |
0.71 |
|
Gallus gallus |
Chicken |
11 |
16.2 |
40.3 |
26.4 |
10.6 |
3.23 |
1.16 |
2.2 |
0.58 |
|
Gasterosteus aculeatus |
Stickleback |
6 |
0.0 |
3.4 |
73.7 |
22.2 |
0.22 |
0.04 |
2.7 |
0.77 |
|
Homo sapiens |
Human |
24 |
22.6 |
33.6 |
22.2 |
11.1 |
3.20 |
0.13 |
2.7 |
0.73 |
|
Homo sapiens |
Human |
31 |
22.8 |
33.2 |
22.7 |
11.2 |
3.01 |
0.13 |
2.5 |
0.70 |
|
Mus musculus |
Mouse |
15 |
7.4 |
40.0 |
34.9 |
14.2 |
0.33 |
0.02 |
2.6 |
0.68 |
|
Mus musculus |
Mouse |
17 |
7.9 |
39.5 |
34.6 |
14.2 |
0.50 |
0.01 |
2.6 |
0.72 |
|
Monodelphis domestica |
Opossum |
32 |
49.1 |
36.6 |
9.7 |
2.3 |
0.57 |
0.54 |
2.5 |
0.72 |
|
Monodelphis domestica |
Opossum |
32 |
49.5 |
35.8 |
10.2 |
2.3 |
0.55 |
0.64 |
2.5 |
0.72 |
|
Ornithorhynchus anatinus |
Platypus |
8 |
0.2 |
22.4 |
61.7 |
14.3 |
1.25 |
0.06 |
2.7 |
0.75 |
|
Oryzias latipes |
Medeka |
16 |
3.5 |
55.3 |
30.7 |
2.5 |
0.14 |
0.12 |
2.7 |
0.75 |
|
Pan troglodytes |
Chimpanzee |
67 |
22.4 |
32.2 |
21.6 |
10.5 |
2.90 |
0.22 |
2.6 |
0.72 |
|
Macaca mulatta |
Macaque |
72 |
24.4 |
35.2 |
22.7 |
11.0 |
3.06 |
0.35 |
2.6 |
0.71 |
|
Rattus norvegicus |
Rat |
63 |
7.6 |
38.0 |
34.5 |
15.7 |
0.74 |
0.12 |
2.6 |
0.72 |
|
Tetraodon nigroviridis |
Pufferfish |
4 |
0.1 |
5.7 |
49.3 |
34.8 |
3.16 |
0.15 |
2.6 |
0.75 |
|
|
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|
*Number of segments in the consensus map in thousands. †Ambiguous amount of DNA that could not be assigned to one of the five isochore families L1 to H3 in the consensus map. ‡Assignment confidence of all stretches in the consensus map: average and standard deviation. Avg., average; SD, standard deviation. |
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|
Schmidt and Frishman Genome Biology 2008 9:R104 doi:10.1186/gb-2008-9-6-r104 |
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