Table 7

Database content

%DNA classified to isochore families in the consensus map

Confidence



Genome

No. of segments*

L1

L2

H1

H2

H3

Am

Avg.

SD


Bos taurus

Cow

48

8.6

45.1

28.4

11.9

3.44

0.14

2.6

0.70

Canis familiaris

Dog

36

25.8

32.5

20.3

11.3

5.05

0.16

2.6

0.71

Danio rerio

Zebrafish

22

76.6

20.4

1.9

0.4

0.12

0.23

2.6

0.74

Danio rerio

Zebrafish

22

78.1

20.1

1.4

0.3

0.08

0.04

2.6

0.76

Drosophila melanogaster

Fruit fly

1

2.6

20.5

70.8

5.7

0.06

0.02

2.6

0.76

Equus ferus caballus

Horse

32

22.1

37.7

22.8

12.5

4.57

0.16

2.6

0.71

Gallus gallus

Chicken

11

16.2

40.3

26.4

10.6

3.23

1.16

2.2

0.58

Gasterosteus aculeatus

Stickleback

6

0.0

3.4

73.7

22.2

0.22

0.04

2.7

0.77

Homo sapiens

Human

24

22.6

33.6

22.2

11.1

3.20

0.13

2.7

0.73

Homo sapiens

Human

31

22.8

33.2

22.7

11.2

3.01

0.13

2.5

0.70

Mus musculus

Mouse

15

7.4

40.0

34.9

14.2

0.33

0.02

2.6

0.68

Mus musculus

Mouse

17

7.9

39.5

34.6

14.2

0.50

0.01

2.6

0.72

Monodelphis domestica

Opossum

32

49.1

36.6

9.7

2.3

0.57

0.54

2.5

0.72

Monodelphis domestica

Opossum

32

49.5

35.8

10.2

2.3

0.55

0.64

2.5

0.72

Ornithorhynchus anatinus

Platypus

8

0.2

22.4

61.7

14.3

1.25

0.06

2.7

0.75

Oryzias latipes

Medeka

16

3.5

55.3

30.7

2.5

0.14

0.12

2.7

0.75

Pan troglodytes

Chimpanzee

67

22.4

32.2

21.6

10.5

2.90

0.22

2.6

0.72

Macaca mulatta

Macaque

72

24.4

35.2

22.7

11.0

3.06

0.35

2.6

0.71

Rattus norvegicus

Rat

63

7.6

38.0

34.5

15.7

0.74

0.12

2.6

0.72

Tetraodon nigroviridis

Pufferfish

4

0.1

5.7

49.3

34.8

3.16

0.15

2.6

0.75


*Number of segments in the consensus map in thousands. Ambiguous amount of DNA that could not be assigned to one of the five isochore families L1 to H3 in the consensus map. Assignment confidence of all stretches in the consensus map: average and standard deviation. Avg., average; SD, standard deviation.

Schmidt and Frishman Genome Biology 2008 9:R104   doi:10.1186/gb-2008-9-6-r104

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