Identification of transcripts with enriched expression in the developing and adult pancreas

doi:10.1186/gb-2008-9-6-r99

Genome Biology

Volume 9
Issue 6

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Hoffman BG
Zavaglia B
Witzsche J
Ruiz de Algara T
Beach M
Hoodless PA
Jones SJ
Marra MA
Helgason CD

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Zavaglia B
Witzsche J
Ruiz de Algara T
Beach M
Hoodless PA
Jones SJ
Marra MA
Helgason CD
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Identification of transcripts with enriched expression in the developing and adult pancreas

Brad G Hoffman¹ , Bogard Zavaglia¹ , Joy Witzsche¹ , Teresa Ruiz de Algara¹ , Mike Beach¹ , Pamela A Hoodless²^,3 , Steven JM Jones³^,4 , Marco A Marra³^,4 and Cheryl D Helgason¹^,5

¹Department of Cancer Endocrinology, BC Cancer Research Center, West 10th Ave, Vancouver, BC, V5Z 1L3, Canada

²Terry Fox Laboratory, BC Cancer Research Center, West 10th Ave, Vancouver, BC, V5Z 1L3, Canada

³Department of Medical Genetics, Faculty of Medicine, University of British Columbia, University Boulevard, Vancouver, BC, V6T 1Z3, Canada

⁴Micheal Smith Genome Sciences Centre, BC Cancer Agency, West 7th Ave, Vancouver, BC, V5Z 4S6, Canada

⁵Department of Surgery, Faculty of Medicine, University of British Columbia, West 10th Avenue, Vancouver, BC, V5Z 4E3, Canada

author email corresponding author email

Genome Biology 2008, 9:R99doi:10.1186/gb-2008-9-6-r99


Published:	14 June 2008

Subject areas: Development, Cell biology, Genetics

Additional files

Additional data file 1:

Number and percentage of tags that map to known pancreas ESTs or transcripts as a function of minimum tag count.

Format: EPS Size: 368KB Download file

Additional data file 2:

Tag counts for the 2,536 tags used in our SAGE tag K-means cluster analysis.

Format: XLS Size: 644KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 3:

Percentage of genes identified as Pdx1 EGFP+, Neurog EGFP+, or Islet enriched by Gu et al. [22] in each of the identified K-means cluster groups.

Format: EPS Size: 1MB Download file

Additional data file 4:

GenePaint-based staining classification results.

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This file can be viewed with: Microsoft Word Viewer

Additional data file 5:

Genes and primer sequences used in qRT-PCR validation studies.

Format: DOC Size: 80KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional data file 6:

Binding information for identified transcription factors.

Format: DOC Size: 62KB Download file

This file can be viewed with: Microsoft Word Viewer