|
Top 25 most specific transcripts in the pancreas SAGE libraries |
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| Tag |
Accession/location |
Symbol |
Pdx1-GFP+ (TS17) |
Pdx1-GFP+ (TS19) |
Neurog3-GFP- (TS20) |
Neurog3-GFP+ (TS20) |
Neurog3-GFP+ (TS 21) |
Neurog3-GFP+ (TS22) |
Whole (TS22) |
Whole (TS26) |
Ducts |
Islets |
MaxS† |
|
|
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| TCCCGCCGTGAAGTGGA |
NM_008387 |
Ins2 |
0* |
0.31 |
0 |
13.11 |
57.43 |
3,298.9 |
4.07 |
139.28 |
1,422.4 |
2,2471.19 |
62.72 |
| TTCTGTCTGGGCTTCCT |
NM_023333 |
2210010C04Rik |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
77.65 |
651.97 |
109.03 |
33.43 |
| GCCCTGTTGGTGCACTT |
NM_008386 |
Ins1 |
0 |
2.83 |
0 |
45.56 |
19.59 |
839.25 |
6.11 |
9.86 |
207.52 |
3,116 |
27.90 |
| TTAGGAGGCTGCTGCTG |
NM_026925 |
Pnlip |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
1,760.99 |
116.04 |
18.10 |
| CCCTGGGTTCAGGAGAT |
NM_025583 |
Ctrb1 |
0 |
0.31 |
0 |
0 |
31.21 |
74.36 |
17.31 |
3,162.83 |
1,443.41 |
385.12 |
18.05 |
| GCCCTGTGGATGCGCTT |
NM_008387 |
Ins2 |
0 |
0 |
0 |
0 |
0.33 |
16.27 |
0 |
0 |
15.96 |
432.14 |
17.58 |
| GTGTGCGCTGGTGGCGA |
NM_007919 |
Ela2 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
69.03 |
181.48 |
4 |
11.75 |
| GCATCGTGAGCTTCGGC |
NM_007919 |
Ela2 |
0 |
0 |
0 |
0 |
0 |
2.32 |
0 |
1,329.96 |
2,680.13 |
1,156.37 |
11.24 |
| GTGTGCGCCGGCGGCGA |
NM_026419 |
Ela3 |
0 |
0 |
0 |
0 |
0 |
1 |
1.02 |
636.02 |
369.67 |
23.01 |
11.14 |
| ACCACCTGGTAACCGTA |
NM_008100 |
Gcg |
7.5 |
63.26 |
0.65 |
2,554.97 |
1,952.71 |
550.42 |
34.63 |
25.88 |
124.34 |
326.1 |
10.99 |
| AAAGTATGCAAATAGCT |
NM_026918 |
1810010M01Rik |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
194.75 |
934.27 |
459.15 |
9.90 |
| CAGACTAAGTACCCATA |
NM_009885 |
Cel |
0 |
0 |
0 |
0 |
0.66 |
1 |
0 |
750.65 |
375.55 |
16.01 |
8.81 |
| TTTTACTTCTAAGAGTC |
NM_021331 |
G6pc2 |
0 |
0 |
0 |
0.31 |
0 |
3.32 |
0 |
0 |
5.88 |
221.07 |
7.74 |
| CCCGGGTGCAAGAAGAA |
NM_018874 |
Pnliprp1 |
0 |
0 |
0 |
5.93 |
12.62 |
18.26 |
16.3 |
1,135.22 |
250.37 |
8 |
7.40 |
| TCCCTTCAACCTTAGAC |
NM_011271 |
Rnase1 |
0 |
0 |
0 |
0 |
0 |
0.33 |
0 |
221.87 |
1,249.33 |
170.05 |
6.48 |
| TTAAACCAGAGTTCATA |
NM_023333 |
2210010C04Rik |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
10.08 |
0 |
5.66 |
| GCCTACAACTAAACTGT |
NM_023182 |
Ctrl |
0 |
0.31 |
0 |
0 |
0 |
0 |
0 |
27.12 |
491.5 |
195.06 |
5.46 |
| GCACCAAGTACACATAT |
NM_029706 |
Cpb1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
303.22 |
209.2 |
21.01 |
5.11 |
| TTGCGCTTCCTGGTGTT |
NM_033612 |
Ela1 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
8.4 |
0 |
4.93 |
| TGGGAGTGGAGGATGCC |
NM_026925 |
Pnlip |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
0 |
29.41 |
9 |
4.83 |
| TTCCAAGTGGAGGAGGT |
NM_018874 |
Pnliprp1 |
0 |
0 |
0 |
0.31 |
0 |
0 |
10.18 |
163.93 |
36.97 |
1 |
4.78 |
| CTAAGAATTGCTTTAAA |
NM_010491 |
Iapp |
0 |
0.31 |
0 |
3.43 |
6.64 |
49.8 |
0 |
2.47 |
25.21 |
170.05 |
4.50 |
| CAGTCCATCAACGACGC |
NM_018809 |
Ptf1a |
0 |
0 |
0 |
0 |
0 |
0 |
7.13 |
0 |
0 |
0 |
4.36 |
| CAAAGAATGCAATCTGA |
nt_039700 |
0 |
0 |
0 |
0 |
0 |
0 |
7.13 |
0 |
0 |
0 |
4.36 |
|
| CTTGCAGTCTGAGTTCG |
nt_039413 |
0 |
0 |
0 |
0 |
0 |
0 |
7.13 |
0 |
0 |
0 |
4.36 |
|
|
*Tag counts are shown as tags per 100,000. This indicates the total number of times a given SAGE tag appears in the library per 100,000 tags and is used to normalize for libraries of varying size. †S is the specificity of the tag. Specificity is calculated as described in the Materials and methods. The maximum S in any one of the libraries created here is indicated. | |||||||||||||
Hoffman et al. Genome Biology 2008 9:R99 doi:10.1186/gb-2008-9-6-r99 |
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