Table 5 |
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|
Features with asymmetric distribution between the parental and derivative loci of post-macaque SDs grouped by sequence identity |
||||
|
Sequence identity |
||||
|
|
||||
|
<0.925 (n = 330) |
0.925-0.95 (n = 444) |
0.95-0.975 (n = 570) |
≥0.975 (n = 302) |
|
|
|
||||
|
Significantly different modifications (paired t-test, adjusted p-value <0.001) |
H3K27me1 |
H3K27me1 |
H2BK5me1 |
H3K27me1 |
|
H3K4me2 |
H3K36me1 |
H3K27me1 |
H3K36me3 |
|
|
H3K9me1 |
H3K36me3 |
H3K36me3 |
H3K9me1 |
|
|
H3R2me1 |
H3K4me1 |
H3K4me1 |
H4R3me2 |
|
|
H3K4me2 |
H3K4me2 |
|||
|
H3K79me1 |
H3K79me1 |
|||
|
H3K79me2 |
H3K9me1 |
|||
|
H3K9me1 |
H3R2me1 |
|||
|
H3R2me1 |
H4K20me1 |
|||
|
Genes/pseudogenes (p-value <0.001) |
||||
|
RefSeq genes |
0.375/0.087 |
0.341/0.087 |
0.367/0.127 |
0.410/0.191 |
|
Duplicated pseudogenes |
None |
0.089/0.223 |
0.043/0.135 |
None |
|
Processed pseudogenes |
None |
0.238/0.413 |
0.104/0.367 |
0.063/0.296 |
|
Other pseudogenes |
None |
0.089/0.253 |
0.056/0.238 |
0.055/0.285 |
|
|
||||
|
The values for genes/pseudogenes are the average number of genes (or pseudogenes) per 1 kb for parental/derivative sequences. Only features with statistical significance are listed. |
||||
|
Zheng Genome Biology 2008 9:R105 doi:10.1186/gb-2008-9-7-r105 |
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