Table 2 |
|
|
MSigDB C2 gene sets most significantly enriched in groups 1-3 |
|
|
Upregulated genes |
Downregulated genes |
|
|
|
|
Group 1 |
|
|
eDEV500 |
lDEV500 |
|
STEMCELL_NEURAL_UP |
SANSOM_APC_5_DN |
|
eDEV200 |
NAKAJIMA_MCS_UP |
|
TARTE_PLASMA_BLASTIC |
TARTE_MATURE_PC |
|
STEMCELL_EMBRYONIC_UP |
CALCIUM_REGULATION_IN_CARDIAC_CELLS |
|
PRMT5_KD_UP |
LEE_DENA_DN |
|
CANCER_NEOPLASTIC_META_UP |
SMOOTH_MUSCLE_CONTRACTION |
|
LI_FETAL_VS_WT_KIDNEY_DN |
YAO_P4_KO_VS_WT_UP |
|
eDEV100 |
lDEV200 |
|
MOREAUX_TACI_HI_IN_PPC_UP |
LEE_ACOX1_DN |
|
Group 2 |
|
|
HOFFMANN_BIVSBII_BI_TABLE2 |
FLECHNER_KIDNEY_TRANSPL_REJ_DN |
|
YU_CMYC_UP |
AGEING_KIDNEY_SPECIFIC_DN |
|
DNA_REPLICATION_REACTOME |
CHANG_SERUM_RESPONSE_DN |
|
eDEV500 |
LE_MYELIN_DN |
|
SERUM_FIBROBLAST_CORE_UP |
AGEING_KIDNEY_DN |
|
CMV_IE86_UP |
VENTRICLES_UP |
|
CHANG_SERUM_RESPONSE_UP |
CARIES_PULP_DN |
|
G1_TO_S_CELL_CYCLE_REACTOME |
UVB_NHEK1_UP |
|
PEART_HISTONE_DN |
SMOOTH_MUSCLE_CONTRACTION |
|
GENOTOXINS_ALL_4HRS_REG |
BRCA_ER_POS |
|
Group 3 |
|
|
SERUM_FIBROBLAST_CELLCYCLE |
FLECHNER_KIDNEY_TRANSPL_REJ_DN |
|
BRCA_ER_NEG |
AGEING_KIDNEY_DN |
|
TARTE_MATURE_PC |
IDX_TSA_UP_CLUSTER6 |
|
DAC_PANC_UP |
AGEING_KIDNEY_SPECIFIC_DN |
|
SANSOM_APC_5_DN |
DIAB_NEPH_DN |
|
NAKAJIMA_MCS_UP |
CARIES_PULP_DN |
|
CANCER_UNDIFFERENTIATED_META_UP |
MITOCHONDRIA |
|
HIF1_TARGETS |
BRCA_ER_POS |
|
LEE_TCELLS3_UP |
VENTRICLES_UP |
|
GENOTOXINS_ALL_4HRS_REG |
HEARTFAILURE_ATRIA_DN |
|
|
|
|
Naxerova et al. Genome Biology 2008 9:R108 doi:10.1186/gb-2008-9-7-r108 |
|
