Table 1 |
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General features of OG1RF compared to V583 |
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|
V583 |
OG1RF |
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|
|
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|
General features |
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|
Size (base pairs) |
3,218,031 |
2,739,633 |
|
|
G+C content (%) |
37.5 |
37.8 |
|
|
rRNA genes |
12 |
12 |
|
|
tRNA genes |
68 |
58 |
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|
Genes common to both strains |
2,474* |
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|
Genes unique to OG1RF |
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|
Similar to known proteins |
114† |
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|
Conserved hypotheticals |
50 |
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|
No database match |
63 |
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|
Total |
227 |
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|
Total number of ORFs |
3,113 |
2,701‡ |
|
|
|
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*The assessment of the genes common to both strains is based on the homology at the DNA level with the ORFs described for V583 (source TIGR [70]). The BLASTN cutoff e-value was 1e-5. †This number includes the proteins with domain polymorphism (see text for details). ‡Estimated number of ORFs calculated by adding the OG1RF-unique ORFs to the number of ORFs shared with V583. |
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Bourgogne et al. Genome Biology 2008 9:R110 doi:10.1186/gb-2008-9-7-r110 |
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