Table 3

OG1RF-unique regulators

OG1RF

Description

Best hit

Size*

Comments


OG1RF_0070

Transcriptional regulator

116512576

102

-

OG1RF_0073

LytR family response regulator

81428169

151

-

OG1RF_0120

BglG family transcriptional antiterminator

47095712

494

Probable regulator of the downstream PTS system

OG1RF_0138

Transcriptional regulator

116493423

219

Probable transcriptional regulator of the downstream ABC superfamily transporter

OG1RF_0143

GntR family transcriptional regulator

82745913

236

Probable regulator of the downstream PTS system

OG1RF_0175

DNA binding protein

15890504

293

Probable regulator of the iol operon

OG1RF_0192

Sensor histidine kinase VanSG

119635646

371

Best homology with VanG and

OG1RF_0193

Response regulator VanRG

119635645

235

VanG2 two-component systems.

OG1RF_0192 and OG1RF_0193 appear cotranscribed with a gene encoding a M15 family muramoylpentapeptide carboxypeptidase

OG1RF_0198

Response regulator

47567135

240

Best homology with AgrA from Bacillus cereus G9241. However, no presence of AgrB or AgrD homologues in the vicinity. Also similar to ComE of S. pneumoniae (52% similarity)

OG1RF_0199

Sensor histidine kinase

47567134

443

Best homology with AgrC from Bacillus cereus G9241. Also similar to ComD of Streptococcus pneumoniae (48% similarity)

OG1RF_0220

Probable endoribonuclease MazF

69244828

114

Toxin-antitoxin described in E.

OG1EF_0221

Probable antitoxin MazE

69244829

77

coli and recently on an E. faecium plasmid


*Amino acids

Bourgogne et al. Genome Biology 2008 9:R110   doi:10.1186/gb-2008-9-7-r110

Open Data