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At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana

Sascha Laubinger1, Georg Zeller12, Stefan R Henz1, Timo Sachsenberg1, Christian K Widmer2, Naïra Naouar34, Marnik Vuylsteke34, Bernhard Schölkopf5, Gunnar Rätsch2 and Detlef Weigel1*

Author Affiliations

1 Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstr. 37-39, 72076 Tübingen, Germany

2 Friedrich Miescher Laboratory of the Max Planck Society, Spemannstr. 39, 72076 Tübingen, Germany

3 Department of Plant Systems Biology, VIB, Technologiepark 927, 9052 Ghent, Belgium

4 Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Ghent, Belgium

5 Department of Empirical Inference, Max Planck Institute for Biological Cybernetics, Spemannstr. 38, 72076 Tübingen, Germany

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Genome Biology 2008, 9:R112  doi:10.1186/gb-2008-9-7-r112

Published: 9 July 2008

Additional files

Additional data file 1:

Listed are all analyzed samples, including growth conditions and plant age.

Format: DOC Size: 48KB Download file

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Additional data file 2:

Shown is the segmentation accuracy of mSTAD.

Format: DOC Size: 69KB Download file

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Additional data file 3:

Shown are the oligonucleotide primers that were used for RT-PCR validation of new transcripts.

Format: DOC Size: 116KB Download file

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Additional data file 4:

Shown is the correlation between platform concordances and probe numbers on the ATH1 array.

Format: DOC Size: 53KB Download file

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Additional data file 5:

Shown is the segmentation accuracy achieved by mSTAD along the five Arabidopsis chromosomes.

Format: DOC Size: 133KB Download file

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Additional data file 6:

Presented are the results of all RT-PCR validation experiments.

Format: DOC Size: 56KB Download file

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Additional data file 7:

Presented is a comparison of mean hybridization intensities in random-primed and oligo-dT-primed samples.

Format: DOC Size: 66KB Download file

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Additional data file 8:

Presented is a comparison of segmentation accuracy for mSTAD and the transfrag method.

Format: DOC Size: 83KB Download file

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Additional data file 9:

Presented are gene identifiers with corresponding expression values and z-scores in all samples we analyzed.

Format: TXT Size: 7.6MB Download file

Open Data