Method
At-TAX: a whole genome tiling array resource for developmental expression analysis and transcript identification in Arabidopsis thaliana
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* Corresponding author: Detlef Weigel weigel@weigelworld.org
1 Department of Molecular Biology, Max Planck Institute for Developmental Biology, Spemannstr. 37-39, 72076 Tübingen, Germany
2 Friedrich Miescher Laboratory of the Max Planck Society, Spemannstr. 39, 72076 Tübingen, Germany
3 Department of Plant Systems Biology, VIB, Technologiepark 927, 9052 Ghent, Belgium
4 Department of Molecular Genetics, Ghent University, Technologiepark 927, 9052 Ghent, Belgium
5 Department of Empirical Inference, Max Planck Institute for Biological Cybernetics, Spemannstr. 38, 72076 Tübingen, Germany
Genome Biology 2008, 9:R112 doi:10.1186/gb-2008-9-7-r112
Published: 9 July 2008Additional files
Additional data file 1:
Listed are all analyzed samples, including growth conditions and plant age.
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Additional data file 2:
Shown is the segmentation accuracy of mSTAD.
Format: DOC Size: 69KB Download file
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Additional data file 3:
Shown are the oligonucleotide primers that were used for RT-PCR validation of new transcripts.
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Additional data file 4:
Shown is the correlation between platform concordances and probe numbers on the ATH1 array.
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Additional data file 5:
Shown is the segmentation accuracy achieved by mSTAD along the five Arabidopsis chromosomes.
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Additional data file 6:
Presented are the results of all RT-PCR validation experiments.
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Additional data file 7:
Presented is a comparison of mean hybridization intensities in random-primed and oligo-dT-primed samples.
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Additional data file 8:
Presented is a comparison of segmentation accuracy for mSTAD and the transfrag method.
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Additional data file 9:
Presented are gene identifiers with corresponding expression values and z-scores in all samples we analyzed.
Format: TXT Size: 7.6MB Download file