Table 2

Transcripts that are more abundant in polyA(±) samples than in polyA(+) samples

Locus

TAIR7 annotation

PolyA(+) (log2)

PolyA(±) (log2)


AT1G12013

H/ACA-box snoRNA

9.07

13.51

AT1G15405

Unknown gene

11.07

14.59

AT1G31960

Unknown protein

5.34

8.74

AT1G33860

Unknown protein

8.10

11.78

AT1G34700

Mutator-like transposase family

4.69

8.14

AT1G35080

Similar to unknown protein

3.70

7.03

AT1G35640

Unknown protein

5.91

9.29

AT1G41726

Pseudogene

6.73

10.30

AT1G61275

U12 snRNA

7.11

12.45

AT2G01022

Gypsy-like retrotransposon family

5.72

9.43

AT2G05567

Pseudogene

4.62

8.59

AT2G06250

Pseudogene

6.45

9.87

AT2G06370

Pseudogene

6.36

9.71

AT2G07709

Pseudogene

7.40

11.28

AT2G07711

Pseudogene

7.05

10.42

AT2G07712

Pseudogene

6.90

10.87

AT2G07717

Pseudogene

7.72

11.22

AT2G08986

Similar to unknown protein

6.64

10.15

AT2G10285

Similar to unknown protein

6.16

9.85

AT2G10720

Pseudogene

7.15

10.67

AT2G10790

Pseudogene

7.03

10.86

AT2G12240

CACTA-like transposase family

5.30

9.98

AT2G12320

Similar to unknown protein

6.56

10.05

AT2G12750

Gypsy-like retrotransposon family

7.20

10.71

AT2G13860

Gypsy-like retrotransposon

6.88

10.29

AT2G25255

Encodes a defensin-like (DEFL) family protein

5.65

9.04

AT3G24370

Similar to unknown protein

5.06

9.58

AT3G29570

Similar to ATEXT3

5.41

9.60

AT3G30846

Gypsy-like retrotransposon family

6.78

10.21

AT3G32010

Gypsy-like retrotransposon family (Athila)

5.37

9.41

AT3G32880

Gypsy-like retrotransposon family (Athila)

6.37

10.60

AT3G42251

Pseudogene

5.82

9.24

AT3G42750

Similar to unknown protein

4.44

7.85

AT3G43154

Pseudogene

5.21

9.22

AT3G43160

MEE38

7.42

11.95

AT3G43862

Athila retroelement ORF2-related

6.07

10.44

AT4G05290

Similar to unknown protein

5.39

10.08

AT4G06531

Pseudogene

4.21

7.93

AT4G06573

Athila retroelement ORF1 protein

7.25

11.01

AT4G06710

Pseudogene

6.53

11.72

AT4G06736

Pseudogene

6.27

9.75

AT4G08080

Gypsy-like retrotransposon family (Athila)

6.84

10.74

AT5G32400

Hypothetical protein

6.92

10.32

AT5G32404

Pseudogene

4.90

9.12

AT5G32475

Athila retroelement ORF2-related

5.75

9.37

AT5G32483

Pseudogene

6.41

9.89

AT5G32495

Pseudogene

5.74

9.44

AT5G32517

Pseudogene

5.91

9.34

AT5G33150

Pseudogene

7.33

10.75

AT5G34970

Similar to unknown protein

5.16

8.63


Laubinger et al. Genome Biology 2008 9:R112   doi:10.1186/gb-2008-9-7-r112

Open Data