Table 1 |
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|
First-pass genomic assembly statistics for five Lake Malawi cichlid species |
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| MC |
LF |
MA |
MZ |
RE |
|
|
|
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| Total number of contigs in assembly |
61,923 |
58,245 |
63,297 |
65,094 |
55,751 |
| Total length (bases) |
73,425,564 |
70,858,381 |
68,238,634 |
79,168,277 |
71,295,074 |
| Genome coveragea (%) |
6.68 |
6.44 |
6.20 |
7.20 |
6.48 |
| Mean trace length (bases) |
1,055 |
1,092 |
991 |
1,145 |
1,153 |
| Shortest contig length (bases) |
50 |
50 |
50 |
50 |
50 |
| Longest contig length (bases) |
19,632 |
17,437 |
21,601 |
15,371 |
21,351 |
| Mean contig length (bases) |
1,186 |
1,217 |
1,078 |
1,216 |
1,279 |
| Q25 contig length (bases) |
759 |
846 |
783 |
805 |
934 |
| Q50 (median) contig length (bases) |
966 |
1,063 |
949 |
1,163 |
1,113 |
| Q75 contig length (bases) |
1,403 |
1,355 |
1,102 |
1,417 |
1,407 |
|
|
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| Total genic length (bases) |
2,863,110 (3.9%) |
2,841,933 (4.0%) |
2,761,941 (4.0%) |
2,851,968 (3.6%) |
2,797,548 (3.9%) |
|
|
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|
aUsing an average cichlid genome size of 1.1 × 109 bases. LF, Labeotropheus fuelleborni; MA, Melanochromis auratus; MC, Mchenga conophorus; MZ, Maylandia zebra; RE, Rhamphochromis esox; Q25, 25th percentile; Q50, median or 50th percentile; Q75, 75th percentile. |
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|
Loh et al. Genome Biology 2008 9:R113 doi:10.1186/gb-2008-9-7-r113 |
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