Table 2

SNP genotyping success categorized by detection method

SNP detection method

Control genes

Automated

Manual BLAST


Number of genotyped loci

13

59

24

Number of polymorphic loci

10

42

16

Number of fixed loci

3

11

4

Number of failed loci

0

6

4


Successful SNP detection (%)

76.9

71.2

66.7


BLAST, Basic Local Alignment Search Tool; SNP, single nucleotide polymorphism.

Loh et al. Genome Biology 2008 9:R113   doi:10.1186/gb-2008-9-7-r113

Open Data