Table 3

SNP genotyping success categorized by polymorphic quality score

Polymorphic quality score

2

3

4

5


Number of genotyped loci

5

15

28

11

Number of polymorphic loci

2

10

24

6

Number of fixed/failed loci

3

5

4

5


Successful SNP detection (%)

40

66.7

85.7

54.5


SNP, single nucleotide polymorphism.

Loh et al. Genome Biology 2008 9:R113   doi:10.1186/gb-2008-9-7-r113

Open Data