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Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants

Sophie Gaudriault12*, Sylvie Pages12, Anne Lanois12, Christine Laroui12, Corinne Teyssier3, Estelle Jumas-Bilak3 and Alain Givaudan12

Author Affiliations

1 INRA, UMR 1133, Laboratoire EMIP, Place Eugène Bataillon, F-34095 Montpellier, France

2 Université Montpellier 2, UMR 1133, Laboratoire EMIP, Place Eugène Bataillon, F-34095 Montpellier, France

3 Université Montpellier 1, EA 3755, Laboratoire de Bactériologie-Virologie, 15, Avenue Charles Flahault, BP 14491, F-34060 Montpellier Cedex 5, France

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Genome Biology 2008, 9:R117  doi:10.1186/gb-2008-9-7-r117

Published: 22 July 2008

Additional files

Additional data file 1:

Presented is a figure showing the deletion in the lopT1 gene in TT01/I strain and the six variants.

Format: PDF Size: 295KB Download file

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Open Data

Additional data file 2:

Presented is a figure showing PFGE of I-CeuI-hydrolyzed genomic DNA of TT01/I strain and the six variants.

Format: PDF Size: 963KB Download file

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Open Data

Additional data file 3:

Presented is a figure showing the copy number of 16S rDNA in TT01/I and the six variants.

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Open Data

Additional data file 4:

Presented is a table listing the TT01/I missing genes in TT01α/I and VAR* variants according whole-genome comparison using DNA microarray.

Format: PDF Size: 39KB Download file

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Open Data

Additional data file 5:

Presented is a table listing the TT01/I amplified genes in TT01α/I and VAR* variants, according to whole-genome comparison using DNA microarray.

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Open Data

Additional data file 6:

Presented is a table listing strains and plasmids used in this study.

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Open Data

Additional data file 7:

Presented is a table listing primers used in this study.

Format: PDF Size: 36KB Download file

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Open Data