Research
Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling
1 Department of Biology, The Pennsylvania State University, Mueller Laboratory, University Park, PA 16802, USA
2 Department of Biology and Penn Genome Frontiers Institute, University of Pennsylvania, South University Avenue, Philadelphia, PA 19104, USA
Genome Biology 2008, 9:R120 doi:10.1186/gb-2008-9-7-r120
Published: 31 July 2008Additional files
Additional data file 1:
Bioinformatic characterization of our second tier candidate G-protein coupled receptors from the Arabidopsis proteome.
Format: DOC Size: 215KB Download file
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Additional data file 2:
Bioinformatic characterization of our second tier candidate G-protein coupled receptors from the Oryza proteome.
Format: DOC Size: 259KB Download file
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Additional data file 3:
Bioinformatic characterization of our second tier candidate G-protein coupled receptors from the Populus proteome.
Format: DOC Size: 333KB Download file
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Additional data file 4:
Reconstructed phylogenetic tree of the Cand6/7 GPCR 'superfamily'.
Format: DOC Size: 25KB Download file
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Additional data file 5:
Multiple sequence alignment of Cand7 (At5g18520) and its closest homologs.
Format: RTF Size: 333KB Download file
Additional data file 6:
Results from our Pfam A database analysis.
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Additional data file 7:
Results from our Pfam B database analysis.
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Additional data file 8:
Arabidopsis sequences removed from our analysis by our QFC ion channel filter.
Format: DOC Size: 108KB Download file
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Additional data file 9:
PredCouple 2 predicted coupling specificities of our candidate GPCRs from all three proteomes.
Format: XLS Size: 75KB Download file
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Additional data file 10:
Bioinformatic characterization of the Arabidopsis proteome (version 6) sequences predicted to be candidate GPCRs by PRED-GPCR.
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Additional data file 11:
Venn diagram detailing the extent of overlap between candidate GPCRs predicted by our analysis and that of Moriyama et al. [49].
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Additional data file 12:
Also listed are Arabidopsis protein sequence identifiers, including splice variant identifiers, used in this study
Format: XLS Size: 1.9MB Download file
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Additional data file 13:
Also listed are Oryza protein sequence identifiers, including splice variant identifiers, used in this study
Format: XLS Size: 3.9MB Download file
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Additional data file 14:
Also listed are Populus protein sequence identifiers, including splice variant identifiers, used in this study
Format: XLS Size: 2.7MB Download file
This file can be viewed with: Microsoft Excel Viewer
