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Resolution: standard / high Figure 6.
Molecular evolutionary analyses of candidate GPCRs shown to physically interact with
GPA1. The Arabidopsis, Oryza, and Populus proteomes were subjected to BLAST analyses (e-20 cutoff) using our positive interacting
candidate GPCR protein sequences (filled triangles). Multiple sequence alignments
were created in ClustalX and evolutionary relationships were estimated using the neighbor
joining method with 1,000 bootstrap replicates. Sequences identified by our bioinformatic
pipeline as candidate GPCRs are indicated with empty triangles, with upward pointing
triangles indicating those found within our high ranking candidate sets and downward
pointing triangles indicating those present in the second tier. Scale bars indicate
evolutionary distance as measured by residue substitutions per site. (a) RGS1; (b) GCR1; (c) Cand2 and Cand8; (d) Cand1; (e) Cand3, 4, and 5; (f) Cand6 and Cand7; and (g) HHP2.
Gookin et al. Genome Biology 2008 9:R120 doi:10.1186/gb-2008-9-7-r120 |