Table 4 |
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|
GPCRsIdentifier classification of the high ranking candidate GPCRs in the Arabidopsis, Oryza, and Populus proteomes |
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|
Genus and locus |
ID |
Prediction |
Family |
Subfamily |
Subfamily type |
|
|
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|
Arabidopsis |
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|
At1g48270.1† |
GCR1 |
GPCRs |
Class A |
Olfactory |
Olfactory I fam |
|
At3g26090.1† |
RGS1 |
GPCRs |
Class A |
Peptide |
|
|
At1g57680.1 |
Cand1 |
GPCRs |
Class A |
Viral |
|
|
At3g05010.1 |
Cand2 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 4 |
|
At3g59090.1 |
Cand3 |
GPCRs |
Class A |
Olfactory |
Olfactory FOR-like |
|
At3g59090.2 |
Cand4 |
GPCRs |
Class A |
Olfactory |
Olfactory FOR-like |
|
At3g59090.3 |
Cand5 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 8 |
|
At4g21790.1* |
TOM1 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 10 |
|
At5g02630.1 |
Cand6 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 4 |
|
At5g18520.1 |
Cand7 |
GPCRs |
Class A |
Peptide |
|
|
At5g27210.1 |
Cand8 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 13 |
|
At2g02180.1 |
TOM3 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 5 |
|
At4g30850.1 |
HHP2 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 1 |
|
At5g26740.1 |
Cand9 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 4 |
|
At1g14530.1 |
THH1 |
GPCRs |
Class A |
Peptide |
|
|
At3g05940.1 |
Cand10 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam 2 |
|
Oryza |
|||||
|
Os01g54784.1 |
GPCRs |
Class A |
Peptide |
||
|
Os01g61970.1 |
GPCRs |
Class A |
Rhodopsin |
||
|
Os01g66190.1 |
GPCRs |
Class C |
|||
|
Os02g40550.1 |
GPCRs |
Class A |
Rhodopsin |
||
|
Os02g45870.1 |
GPCRs |
Class A |
Olfactory |
Olfactory I fam |
|
|
Os03g36790.1 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam5 |
|
|
Os03g54920.1 |
GPCRs |
Class A |
Rhodopsin |
||
|
Os04g36630.1 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam10 |
|
|
Os04g42960.1 |
GPCRs |
Class A |
Rhodopsin |
||
|
Os05g39730.1 |
GPCRs |
Class A |
Lysosphingolipid |
||
|
Os06g04130.1 |
GPCRs |
Class A |
Rhodopsin |
||
|
Os06g09930.1 |
GPCRs |
Class A |
Olfactory |
Olfactory I fam |
|
|
Os07g01250.1 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam4 |
|
|
Populus |
|||||
|
Pop205267 |
GPCRs |
Class A |
Peptide |
||
|
Pop240991 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam2 |
|
|
Pop241510 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam4 |
|
|
Pop254437 |
GPCRs |
Class A |
Peptide |
||
|
Pop256636 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam10 |
|
|
Pop272274 |
GPCRs |
Class A |
Thyrotropin |
||
|
Pop273474 |
GPCRs |
Class A |
Peptide |
||
|
Pop279432 |
GPCRs |
Class C |
|||
|
Pop294952 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam2 |
|
|
Pop554569 |
GPCRs |
Class A |
Nucleotide |
||
|
Pop561523 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam4 |
|
|
Pop569632 |
GPCRs |
Class A |
Olfactory |
Olfactory I fam |
|
|
Pop647588 |
GPCRs |
Class A |
Olfactory |
Olfactory I fam |
|
|
Pop742547 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam6 |
|
|
Pop762585 |
GPCRs |
Class A |
Peptide |
||
|
Pop796139 |
Globular |
||||
|
Pop797267 |
GPCRs |
Class A |
Nucleotide |
||
|
Pop820940 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam9 |
|
|
Pop822025 |
GPCRs |
Class A |
Olfactory |
Olfactory II fam5 |
|
|
Pop832788 |
GPCRs |
Class A |
Olfactory |
Olfactory I fam |
|
|
|
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|
Arabidopsis candidate GPCRs shown to interact with GPA1 in vivo in the split-ubiquitin fusion assays are identified in bold while the sole negative result is indicated with an asterisk. Oryza and Populus candidate GPCRs that are orthologous to one of the emboldened Arabidopsis candidates are identified in italic type (see Table 5 for orthology details). †GCR1 and RGS1 interaction with GPA1 in the split-ubiquitin system was previously described by Pandey and Assmann [60] and Chen et al. [20], respectively. |
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|
Gookin et al. Genome Biology 2008 9:R120 doi:10.1186/gb-2008-9-7-r120 |
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