Table 5

Characterization of our high ranking Oryza candidate G-protein coupled receptors

Locus

QFC

GPCRHMM

TMHMM

HMMTOP

Phobius

Pcut-T

Pcut-H

Query

e-value


Upper bin

Os01g54784.1

*

*

7 (out)

7 (out)

7 (out)

Cand3,4,5

<e-85

Os01g61970.1

*

*

8 (in)

9 (out)

7 (out)

7 (out)

7 (out)

Cand7

e-150

Os01g66190.1

*

*

7 (out)

7 (out)

7 (out)

Cand1

e-65

Os04g36630.1

*

*

7 (out)

7 (out)

7 (out)

Cand1

e-60

Os05g39730.1

*

*

6 (in)

7 (out)

7 (out)

Os06g04130.1

*

*

7 (in)

9 (out)

7 (out)

6 (out)

7 (out)

Cand7

e-123

Os06g09930.1

*

*

7 (out)

7 (out)

7 (out)

7 (out)

7 (out)

GCR1

e-120

Lower bin

Os03g36790.1

*

-0.81

8 (in)

8 (in)

7 (out)

7 (out)

7 (out)

Os07g01250.1

*

-1.16

7 (out)

7 (out)

7 (out)

Os02g40550.1

*

-1.17

8 (in)

8 (in)

7 (out)

7 (out)

7 (out)

Cand7

e-111

Os04g42960.1

*

-4.39

8 (in)

9 (out)

7 (out)

7 (out)

8 (in)

Cand7

e-120

Os03g54920.1

*

-8.01

7 (in)

6 (out)

7 (out)

Cand2,8

<e-96

Os02g45870.1

*

-9.73

6 (in)

7 (out)

7 (out)


High ranking Oryza candidate GPCRs that are orthologous to our Arabidopsis candidate GPCRs demonstrated to interact with the Arabidopsis Gα subunit are shown in bold and BLAST e-values are provided to support their identification (see Table 1 for additional details).

Gookin et al. Genome Biology 2008 9:R120   doi:10.1186/gb-2008-9-7-r120

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