Table 5 |
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|
Characterization of our high ranking Oryza candidate G-protein coupled receptors |
|||||||||
|
Locus |
QFC |
GPCRHMM |
TMHMM |
HMMTOP |
Phobius |
Pcut-T |
Pcut-H |
Query |
e-value |
|
|
|||||||||
|
Upper bin |
|||||||||
|
Os01g54784.1 |
* |
* |
7 (out) |
7 (out) |
7 (out) |
Cand3,4,5 |
<e-85 |
||
|
Os01g61970.1 |
* |
* |
8 (in) |
9 (out) |
7 (out) |
7 (out) |
7 (out) |
Cand7 |
e-150 |
|
Os01g66190.1 |
* |
* |
7 (out) |
7 (out) |
7 (out) |
Cand1 |
e-65 |
||
|
Os04g36630.1 |
* |
* |
7 (out) |
7 (out) |
7 (out) |
Cand1 |
e-60 |
||
|
Os05g39730.1 |
* |
* |
6 (in) |
7 (out) |
7 (out) |
||||
|
Os06g04130.1 |
* |
* |
7 (in) |
9 (out) |
7 (out) |
6 (out) |
7 (out) |
Cand7 |
e-123 |
|
Os06g09930.1 |
* |
* |
7 (out) |
7 (out) |
7 (out) |
7 (out) |
7 (out) |
GCR1 |
e-120 |
|
Lower bin |
|||||||||
|
Os03g36790.1 |
* |
-0.81 |
8 (in) |
8 (in) |
7 (out) |
7 (out) |
7 (out) |
||
|
Os07g01250.1 |
* |
-1.16 |
7 (out) |
7 (out) |
7 (out) |
||||
|
Os02g40550.1 |
* |
-1.17 |
8 (in) |
8 (in) |
7 (out) |
7 (out) |
7 (out) |
Cand7 |
e-111 |
|
Os04g42960.1 |
* |
-4.39 |
8 (in) |
9 (out) |
7 (out) |
7 (out) |
8 (in) |
Cand7 |
e-120 |
|
Os03g54920.1 |
* |
-8.01 |
7 (in) |
6 (out) |
7 (out) |
Cand2,8 |
<e-96 |
||
|
Os02g45870.1 |
* |
-9.73 |
6 (in) |
7 (out) |
7 (out) |
||||
|
|
|||||||||
|
High ranking Oryza candidate GPCRs that are orthologous to our Arabidopsis candidate GPCRs demonstrated to interact with the Arabidopsis Gα subunit are shown in bold and BLAST e-values are provided to support their identification (see Table 1 for additional details). |
|||||||||
|
Gookin et al. Genome Biology 2008 9:R120 doi:10.1186/gb-2008-9-7-r120 |
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