Table 6

Characterization of our high ranking Populus candidate G-protein coupled receptors

Locus

QFC

GPCRHMM

TMHMM

HMMTOP

Phobius

Pcut-T

Pcut-H

Query

e-value


Upper bin

Pop205267

*

*

7 (out)

7 (out)

7 (out)

Cand3,4,5

<e-110

Pop241510

*

*

7 (out)

7 (out)

7 (out)

7 (out)

7 (out)

Cand7

e-130

Pop254437

*

*

7 (out)

7 (out)

7 (out)

7 (out)

7 (out)

Pop256636

*

*

7 (out)

7 (out)

7 (out)

Cand7

0.0

Pop561523

*

*

7 (out)

7 (out)

7 (out)

7 (out)

7 (out)

Cand7

0.0

Pop569632

*

*

7 (out)

7 (out)

7 (out)

Cand1

e-32

Pop742547

*

*

7 (out)

7 (out)

7 (out)

Cand1

e-110

Pop797267

*

*

7 (out)

8 (in)

7 (out)

7 (out)

7 (out)

Cand7

e-129

Pop820940

*

*

7 (out)

7 (out)

7 (out)

GCR1

e-142

Pop272274

*

*

7 (out)

8 (in)

7 (out)

Cand1

e-114

Pop554569

*

*

7 (out)

7 (out)

7 (out)

6 (in)

7 (out)

Cand7

e-130

Pop647588

*

*

6 (in)

7 (out)

7 (out)

Lower bin

Pop294952

*

-1.05

7 (out)

7 (out)

7 (out)

Cand2,8

<e-115

Pop240991

*

-2.37

7 (out)

7 (out)

7 (out)

Cand2,8

<e-117

Pop273474

*

-2.99

7 (out)

7 (out)

7 (out)

7 (out)

7 (out)

Pop822025

*

-3.67

7 (out)

7 (out)

7 (out)

Pop279432

*

-4.84

7 (in)

7 (out)

7 (out)

Pop796139

*

-5.58

7 (in)

8 (in)

7 (in)

Pop762585

*

-6.23

7 (out)

7 (out)

7 (out)

Pop832788

*

-8.32

7 (out)

7 (out)

7 (out)


Protein sequences orthologous to our Arabidopsis candidate GPCRs demonstrated to interact with the Arabidopsis Gα subunit are shown in bold and BLAST e-values are provided to support their identification (see Table 1 for additional details).

Gookin et al. Genome Biology 2008 9:R120   doi:10.1186/gb-2008-9-7-r120

Open Data