Figure 5.

OCT4 and NANOG chromosome array recovery curves. (a, c) The OCT4 (a) and NANOG (c) ChIP-PET recovery curves for the chromosome array. These represent the fraction of ChIP-PET recovery under a range of ChIP-chip p-value cut-offs. (b, d) OCT4 (b) and NANOG (d) ChIP-chip recovery curves. These show the ChIP-chip percent recovery at varying ChIP-PET read thresholds. In all cases, recovery curves are made for a variety of distances (0-8 kb) permitted between a ChIP-chip peak and ChIP-PET read for them to be considered 'overlapping'.