Table 1 |
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|
Dysregulated genes (compared to B6 expression levels) in M. spretus and the IRCSs |
||||
| All genes considered |
||||
| Pan genomic (37,432) |
SEG |
44H |
137F |
97C |
| Under-expressed |
3,290 |
57 |
15 |
26 |
| Over-expressed |
3,560 |
19 |
45 |
2 |
| ∑ |
6,850 |
76 |
60 |
28 |
| Percentage of modified genes |
20.90 |
0.23 |
0.18 |
0.09 |
| Proportion of under-expressed (%) |
48.0 |
75.0 |
25.0 |
92.9 |
| Only genes inside B6 segments considered |
||||
| Genetic background (variable number according to the strain) |
44H |
137F |
97C |
|
| Under-expressed |
21 |
2 |
11 |
|
| Over-expressed |
3 |
30 |
0 |
|
| ∑ |
24 |
32 |
11 |
|
| Percentage of modified genes |
0.06 |
0.09 |
0.03 |
|
| Proportion of under-expressed (%) |
87.5 |
6.3 |
100.0 |
|
|
|
||||
|
A statistical overview of genes with modified expression in the various genomic contexts examined in this study, compared to the B6 strain taken as a reference. |
||||
|
L'Hôte et al. Genome Biology 2008 9:R133 doi:10.1186/gb-2008-9-8-r133 |
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