Table 2

Clusters of genes deregulated in trx mutants

ID

Chromosome

Start

End

Regulation

Deregulated genes

No deregulated genes


1

2L

7,740,552

7,753,160

Acp1, CG7214, CG7203

CG7211

2

2R

6,757,647

6,771,890

CG9080, CG30029, CG7738, CG13224

CG13226, Or47a, CG9079

3

2R

7,906,941

7,941,371

CG8836, CG8505, CG8510, CG8511, CG8520

Or49a, CG30048, CG30050, CG33626, CG33627, CG8515, CG13157, CG8834

4

2R

12,673,194

12,681,364

CG30458, CG30457, CG10953

5

2R

13,899,427

13,905,472

CG18107, CG16836, CG15068

CG15067, IM2, IM3, CG15065

6

3L

1,190,902

1,211,770

LysB, LysC, LysD, LysP, LysS

LysE

7

3L

1,286,480

1,296,909

CG9149, CG2469, CG9186

CG2277

8

3L

4,429,174

4,447,704

CG12607, CG11345, CG32241

CG15022, CG15023, CG15024

9

3L

6,097,832

6,125,586

l(3)mbn, CG18779, CG18778, Lcp65Ag2, Lcp65Ae, CG32405, C32404, Lcp65Ac, Lcp65Ab2, Lcp65Aa

Lcp65Ag1, Lcp65Af, Lcp65Ad, Lcp65Ab1, CG18777

10

3L

8,189,385

8,196,898

CG8012, CG13674, CG13678

11

3L

9,350,364

9,359,229

Hsp26, Hsp23, Hsp27

Hsp67Ba

12

3L

11,103,295

11,109,286

CG7628, CG32074, CG14143

nol

13

3L

11,482,913

11,487,349

Sgs8, Sgs7, Sgs3

CG33272

14

3L

11,917,595

11,926,172

CG5883, CG7252, CG17826

15

3L

15,017,322

15,026,980

CG13461, CG18649, CG13460

CG13463

16

3L

16,230,688

16,260,799

CG13069, CG13068, CG13067, CG13047, CG4962

CG4950, CG13066, CG13065, CG13050, CG13064, CG13049, CG13048, CG13046, CG13045

17

3L

16,266,728

16,289,521

CG4982, CG13063, CG13042, CG13041, CG13060, CG13059

CG13044, CG13043, CG32160, CG13062, Nplp3

18

3L

20,138,463

20,154,238

CG7290, CG7017, CG6933

CG6996, CG32224

19

3L

21,226,060

21,235,012

CG11310, Edg78E, CG7658

CG7663

20

3L

21,664,564

21,691,822

CG14569, CG14568, CG14566, CG14572, CG14565, CG14564

CG14573, CG14567, Syn1

21

3R

2,512,449

2,530,625

Ccp84Ag, Ccp84Ad, Ccp84Ab, Ccp84Aa

Ccp84Af, Ccp84Ae, Ccp84Ac

22

3R

10,386,703

10,392,190

CG14850, CG8087, CG14852

CG14851

23

3R

14,551,120

14,558,756

CG7714, CG7715, CG14302

24

3R

22,444,844

22,458,678

CG5468, CG14240, CG6452, CG5476

CG6478, CG6447, CG6460, CG5471

25

X

17,040,356

17,065,159

CG32564, CG10598, CG10597

CG32563, CG12995, CG18258, CG5162, CG12998, CG5172, CG12997


For each cluster we display: identifier, chromosome, genomic coordinates (start and end), regulation (up or down), co-expressed genes, and no co-expressed genes in the microarray.

Blanco et al. Genome Biology 2008 9:R134   doi:10.1186/gb-2008-9-9-r134

Open Data