Table 2 |
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|
Clusters of genes deregulated in trx mutants |
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|
ID |
Chromosome |
Start |
End |
Regulation |
Deregulated genes |
No deregulated genes |
|
|
||||||
|
1 |
2L |
7,740,552 |
7,753,160 |
↓ |
Acp1, CG7214, CG7203 |
CG7211 |
|
2 |
2R |
6,757,647 |
6,771,890 |
↑ |
CG9080, CG30029, CG7738, CG13224 |
CG13226, Or47a, CG9079 |
|
3 |
2R |
7,906,941 |
7,941,371 |
↓ |
CG8836, CG8505, CG8510, CG8511, CG8520 |
Or49a, CG30048, CG30050, CG33626, CG33627, CG8515, CG13157, CG8834 |
|
4 |
2R |
12,673,194 |
12,681,364 |
↓ |
CG30458, CG30457, CG10953 |
|
|
5 |
2R |
13,899,427 |
13,905,472 |
↑ |
CG18107, CG16836, CG15068 |
CG15067, IM2, IM3, CG15065 |
|
6 |
3L |
1,190,902 |
1,211,770 |
↑ |
LysB, LysC, LysD, LysP, LysS |
LysE |
|
7 |
3L |
1,286,480 |
1,296,909 |
↓ |
CG9149, CG2469, CG9186 |
CG2277 |
|
8 |
3L |
4,429,174 |
4,447,704 |
↓ |
CG12607, CG11345, CG32241 |
CG15022, CG15023, CG15024 |
|
9 |
3L |
6,097,832 |
6,125,586 |
↓ |
l(3)mbn, CG18779, CG18778, Lcp65Ag2, Lcp65Ae, CG32405, C32404, Lcp65Ac, Lcp65Ab2, Lcp65Aa |
Lcp65Ag1, Lcp65Af, Lcp65Ad, Lcp65Ab1, CG18777 |
|
10 |
3L |
8,189,385 |
8,196,898 |
↓ |
CG8012, CG13674, CG13678 |
|
|
11 |
3L |
9,350,364 |
9,359,229 |
↑ |
Hsp26, Hsp23, Hsp27 |
Hsp67Ba |
|
12 |
3L |
11,103,295 |
11,109,286 |
↓ |
CG7628, CG32074, CG14143 |
nol |
|
13 |
3L |
11,482,913 |
11,487,349 |
↑ |
Sgs8, Sgs7, Sgs3 |
CG33272 |
|
14 |
3L |
11,917,595 |
11,926,172 |
↑ |
CG5883, CG7252, CG17826 |
|
|
15 |
3L |
15,017,322 |
15,026,980 |
↑ |
CG13461, CG18649, CG13460 |
CG13463 |
|
16 |
3L |
16,230,688 |
16,260,799 |
↓ |
CG13069, CG13068, CG13067, CG13047, CG4962 |
CG4950, CG13066, CG13065, CG13050, CG13064, CG13049, CG13048, CG13046, CG13045 |
|
17 |
3L |
16,266,728 |
16,289,521 |
↓ |
CG4982, CG13063, CG13042, CG13041, CG13060, CG13059 |
CG13044, CG13043, CG32160, CG13062, Nplp3 |
|
18 |
3L |
20,138,463 |
20,154,238 |
↑ |
CG7290, CG7017, CG6933 |
CG6996, CG32224 |
|
19 |
3L |
21,226,060 |
21,235,012 |
↓ |
CG11310, Edg78E, CG7658 |
CG7663 |
|
20 |
3L |
21,664,564 |
21,691,822 |
↓ |
CG14569, CG14568, CG14566, CG14572, CG14565, CG14564 |
CG14573, CG14567, Syn1 |
|
21 |
3R |
2,512,449 |
2,530,625 |
↓ |
Ccp84Ag, Ccp84Ad, Ccp84Ab, Ccp84Aa |
Ccp84Af, Ccp84Ae, Ccp84Ac |
|
22 |
3R |
10,386,703 |
10,392,190 |
↑ |
CG14850, CG8087, CG14852 |
CG14851 |
|
23 |
3R |
14,551,120 |
14,558,756 |
↑ |
CG7714, CG7715, CG14302 |
|
|
24 |
3R |
22,444,844 |
22,458,678 |
↓ |
CG5468, CG14240, CG6452, CG5476 |
CG6478, CG6447, CG6460, CG5471 |
|
25 |
X |
17,040,356 |
17,065,159 |
↓ |
CG32564, CG10598, CG10597 |
CG32563, CG12995, CG18258, CG5162, CG12998, CG5172, CG12997 |
|
|
||||||
|
For each cluster we display: identifier, chromosome, genomic coordinates (start and end), regulation (up or down), co-expressed genes, and no co-expressed genes in the microarray. |
||||||
|
Blanco et al. Genome Biology 2008 9:R134 doi:10.1186/gb-2008-9-9-r134 |
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