Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
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* Corresponding author: Markus Ringnér markus.ringner@med.lu.se
Genome Biology 2008, 9:R136 doi:10.1186/gb-2008-9-9-r136
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BioMed Central: 5 citations
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Method
Christopher Yau, Dmitri Mouradov, Robert N Jorissen, Stefano Colella, Ghazala Mirza, Graham Steers, Adrian Harris, Jiannis Ragoussis, Oliver Sieber, Christopher C Holmes Genome Biology 2010, 11:R92 (21 September 2010) OncoSNP is a method for detecting CNVs in tumors from SNP array data that can account for contaminating healthy tissue.
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Method
Eric Letouzé, Yves Allory, Marc A Bollet, François Radvanyi, Frédéric Guyon Genome Biology 2010, 11:R76 (22 July 2010) TuMult is a method for reconstructing the history of cancer progression from copy number variations in several samples from a patient
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Research article
A new analysis tool for individual-level allele frequency for genomic studies Hsin-Chou Yang, Hsin-Chi Lin, Mei-Chu Huang, Ling-Hui Li, Wen-Harn Pan, Jer-Yuarn Wu, Yuan-Tsong Chen BMC Genomics 2010, 11:415 (5 July 2010) |
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Research article
An integrated Bayesian analysis of LOH and copy number data Paola MV Rancoita, Marcus Hutter, Francesco Bertoni, Ivo Kwee BMC Bioinformatics 2010, 11:321 (15 June 2010) |
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Methodology article
Johan Staaf, Johan Vallon-Christersson, David Lindgren, Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Åke Borg, Markus Ringnér BMC Bioinformatics 2008, 9:409 (2 October 2008) |