Table 1

mBAF statistics for homozygous SNPs in HapMap samples analyzed on Illumina BeadChips

Data set

Illumina platform

Number of samples

95th percentile mBAFAA+BB

99th percentile mBAFAA+BB

Mean mBAFAA ± SD

Mean mBAFBB ± SD


Reference 1

300k v1

111

0.99

0.973

0.998 ± 0.006

0.998 ± 0.006

Reference 2

300k v2

120

0.989

0.968

0.997 ± 0.005

0.998 ± 0.006

Reference 3

370k

123

0.98

0.961

0.993 ± 0.008

0.996 ± 0.009

Reference 4

550k

120

0.982

0.966

0.993 ± 0.008

0.998 ± 0.006


SD, standard deviation.

Staaf et al. Genome Biology 2008 9:R136   doi:10.1186/gb-2008-9-9-r136

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