|
mBAF statistics for homozygous SNPs in HapMap samples analyzed on Illumina BeadChips |
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| Data set |
Illumina platform |
Number of samples |
95th percentile mBAFAA+BB |
99th percentile mBAFAA+BB |
Mean mBAFAA ± SD |
Mean mBAFBB ± SD |
|
|
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| Reference 1 |
300k v1 |
111 |
0.99 |
0.973 |
0.998 ± 0.006 |
0.998 ± 0.006 |
| Reference 2 |
300k v2 |
120 |
0.989 |
0.968 |
0.997 ± 0.005 |
0.998 ± 0.006 |
| Reference 3 |
370k |
123 |
0.98 |
0.961 |
0.993 ± 0.008 |
0.996 ± 0.009 |
| Reference 4 |
550k |
120 |
0.982 |
0.966 |
0.993 ± 0.008 |
0.998 ± 0.006 |
|
SD, standard deviation. | ||||||
Staaf et al. Genome Biology 2008 9:R136 doi:10.1186/gb-2008-9-9-r136 |
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