Table 2

Protein features

Protein feature

Source


Gene names and aliases

BioGRID [50] 2.0.34

Amino acid sequences

Biomart [58]

Paralogs

COG [59], Biomart [58]

Pfam A/B motifs

Pfam [31] 21.0

SMART [32,33] motifs

InterPro [60] 15.0

Prosite [30] motifs

SCOP [34] superfamilies

GO functional annotations

GO [35] 05/2007 download


Protein features used to annotate proteins in the built-in data sets provided with NetGrep.

Banks et al. Genome Biology 2008 9:R138   doi:10.1186/gb-2008-9-9-r138

Open Data