Table 2 |
|||||
|
Mean thresholds and accuracy for pseudo/real exon classification (10-fold cross-validation) |
|||||
|
Threshold |
Accuracy |
||||
|
|
|
||||
|
SRE set |
Measure |
Mean |
SD |
Mean |
SD |
|
|
|||||
|
ESEcomb |
Exonic density |
0.564* |
0.000 |
0.672 |
0.008 |
|
Intronic density |
0.450† |
0.010 |
0.588 |
0.010 |
|
|
Exonic relative abundance |
0.136* |
0.014 |
0.699 |
0.009 |
|
|
SRall |
Exonic density |
0.486* |
0.003 |
0.535 |
0.006 |
|
Intronic density |
0.481† |
0.002 |
0.585 |
0.010 |
|
|
Exonic relative abundance |
0.163* |
0.019 |
0.580 |
0.012 |
|
|
ESScomb |
Exonic density |
0.358† |
0.017 |
0.613 |
0.013 |
|
Intronic density |
0.492* |
0.005 |
0.614 |
0.009 |
|
|
Exonic relative abundance |
-0.216† |
0.007 |
0.707 |
0.010 |
|
|
|
|||||
|
*Minimum score cut-off for predicted real exons. †Maximum score cut-off for predicted real exons. |
|||||
|
Corvelo and Eyras Genome Biology 2008 9:R141 doi:10.1186/gb-2008-9-9-r141 |
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