Table 2

Median APR in a ten-fold cross validation across BP, MF, CC and all the target GO annotations

BP

MF

CC

All GO


Networkfull

0.114

0.388

0.237

0.157

Min

0.108

0.318

0.163

0.145

Mean

0.144

0.431

0.196

0.195

Max

0.119

0.403

0.209

0.165

Classifier

0.088

0.261

0.128

0.119

Networkslim

0.107

0.390

0.207

0.152


The best prediction quality in each column is highlighted in bold. APR, average precision; BP, biological process; CC, cellular component; GO, Gene Ontology; MF, molecular function.

Kim et al. Genome Biology 2008 9(Suppl 1):S5   doi:10.1186/gb-2008-9-s1-s5

Open Data