Per protein evaluation, irrespective of term size. Each panel plots the average precision across all protein in the held-out set (y-axis), using four fixed recall levels (x-axis). The bars in the top row and the nodes in the second row of panels are colored according to the 12 methods, as described in Figure 4.
Obozinski et al. Genome Biology 2008 9(Suppl 1):S6 doi:10.1186/gb-2008-9-s1-s6