Genome Biology

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This article is part of the supplement: The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge

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Evaluation of text-mining systems for biology: overview of the Second BioCreative community challenge

Martin Krallinger, Alexander Morgan, Larry Smith, Florian Leitner, Lorraine Tanabe, John Wilbur*, Lynette Hirschman* and Alfonso Valencia*

Genome Biology 2008, 9(Suppl 2):S1 doi:10.1186/gb-2008-9-s2-s1

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Assessment of NER solutions against the first and second CALBC Silver Standard Corpus

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Biblio-MetReS: A bibliometric network reconstruction application and server

Anabel Usié, Hiren Karathia, Ivan Teixidó, Joan Valls, Xavier Faus, Rui Alves, Francesc Solsona BMC Bioinformatics 2011, 12:387 (5 October 2011)

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Detection of interaction articles and experimental methods in biomedical literature

Gerold Schneider, Simon Clematide, Fabio Rinaldi BMC Bioinformatics 2011, 12(Suppl 8):S13 (3 October 2011)

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Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions

Shashank Agarwal, Feifan Liu, Hong Yu BMC Bioinformatics 2011, 12(Suppl 8):S10 (3 October 2011)

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Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases

Andrew Chatr-aryamontri, Andrew Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers BMC Bioinformatics 2011, 12(Suppl 8):S8 (3 October 2011)

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The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sergio Matos, Sun Kim, W Wilbur, Luis Rocha, Hagit Shatkay, Ashish V Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu et al. BMC Bioinformatics 2011, 12(Suppl 8):S3 (3 October 2011)

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Overview of the BioCreative III Workshop

Cecilia N Arighi, Zhiyong Lu, Martin Krallinger, Kevin B Cohen, W Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S1 (3 October 2011)

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Word add-in for ontology recognition: semantic enrichment of scientific literature

J Lynn Fink, Pablo Fernicola, Rahul Chandran, Savas Parastatidis, Alex Wade, Oscar Naim, Gregory B Quinn, Philip E Bourne BMC Bioinformatics 2010, 11:103 (24 February 2010)

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The High Throughput Sequence Annotation Service (HT-SAS) – the shortcut from sequence to true Medline words

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