Table 6

Examples for template features used in the profile-based method

activation of * Protein1 * to * Protein2

interaction of * Protein1 * and * Protein2

association of * Protein1 * with * Protein2

interaction between * Protein1 * and * Protein2

binding of * Protein1 * to * Protein2

Protein1 * bind * to * Protein2

Protein1 * activate * Protein2

activation of * Protein1 * with * Protein2

Protein1 * coimmunoprecipitate * with * Protein2

Protein1 * copurify * with * Protein2

Protein1 * mediate * interaction * Protein2

Protein1 * form * complex * with * Protein2

Protein1 * phosphorylate * Protein2

Protein1 * interact * with * Protein2

Protein1 * associate * with * Protein2

Protein1 * in * complex * with * Protein2

Protein1 * regulate * Protein2

regulation of * Protein1 * by * Protein2

yeast * Protein1 * screen * Protein2

yeast * strain * Protein1 * and * Protein2

yeast * Protein1 * to * function * Protein2

Protein1 * lead * to * activation * of * Protein2


Template examples are listed in this table. These templates are reproduced from [26]. The complete list of template features is available upon request from the authors. The asterisk in the template features indicates that any word can be skipped.

Huang et al. Genome Biology 2008 9(Suppl 2):S12   doi:10.1186/gb-2008-9-s2-s12

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