This article is part of the supplement: The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge
Gene mention normalization and interaction extraction with context models and sentence motifs
1 Bioinformatics Group, Biotechnological Centre, Technische Universität Dresden, Tatzberg, 01307 Dresden, Germany
2 Knowledge Management in Bioinformatics, Computer Science Department, Humboldt-Universität zu Berlin, Unter den Linden, 10099 Berlin, Germany
3 Current affiliation: BioAI Lab, Arizona State University, S Mill Avenue, Tempe/Phoenix, Arizona 85281-8809, USA
4 Transinsight GmbH, Tatzberg, 01307 Dresden, Germany
Genome Biology 2008, 9(Suppl 2):S14 doi:10.1186/gb-2008-9-s2-s14Published: 1 September 2008
Additional file 1:
Regular expressions catching gene names that are too unspecific - that is, false positives in the BioCreative II gene normalization data. These result, for example, from protein families, tissues, or other 'spurious' synonyms in the original lexicon.
Format: TXT Size: 3KB Download file
Additional file 2:
The file contains verbs, nouns, and adjectives that can refer to PPIs.
Format: TXT Size: 16KB Download file