Table 3

Performance of the IPS system on the BioCreative II data

Short description

Precision

Recall

Micro-F

Macro-F

m = 2; gl = 0.83; ld = 3; ids = 2; sr = a, h, m, y, *

1.8

43.7

3.5

3.1

m = 1; gl = 0.83; ld = 3; ids = 1; sr = a,*

25.2

23.3

24.2

21.1

m = 1; gl = 0.75; ld = 5; ids = 1; sr = a,*

22.8

21.6

22.2

19.7

Results for different strategies using the IntAct pattern collection on the BioCreative II test set. gl, guide list cut-off; ids, number of submitted IDs per protein; IPS, interaction pair subtask; ld, maximum length difference; m, minimum of identified interactions per pair and article required; sr, species resolution (pick first species from abstract [a], pick human [h], mouse [m], yeast [y], or from best scored protein [*], in the given order; see text for explanations on these parameters).

Hakenberg et al. Genome Biology 2008 9(Suppl 2):S14   doi:10.1186/gb-2008-9-s2-s14