Genome Biology

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This article is part of the supplement: The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge

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Overview of BioCreative II gene mention recognition

Larry Smith*, Lorraine K Tanabe*, Rie J Ando, Cheng-Ju Kuo, I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, Roman Klinger, Christoph M Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A Struble, Richard J Povinelli, Andreas Vlachos, William A Baumgartner, Lawrence Hunter, Bob Carpenter, Richard TH Tsai, Hong-Jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Maña-López, Jacinto Mata and W John Wilbur*

Genome Biology 2008, 9(Suppl 2):S2 doi:10.1186/gb-2008-9-s2-s2

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Training text chunkers on a silver standard corpus: can silver replace gold?

Ning Kang, Erik M van Mulligen, Jan A Kors BMC Bioinformatics 2012, 13:17 (30 January 2012)

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Combining active learning and semi-supervised learning techniques to extract protein interaction sentences

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Classifying protein-protein interaction articles using word and syntactic features

Sun Kim, W Wilbur BMC Bioinformatics 2011, 12(Suppl 8):S9 (3 October 2011)

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The gene normalization task in BioCreative III

Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illes Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sergio Matos, David Campos, Karin Verspoor, Kevin M Livingston, W Wilbur BMC Bioinformatics 2011, 12(Suppl 8):S2 (3 October 2011)

Research   Open Access

Overview of the BioCreative III Workshop

Cecilia N Arighi, Zhiyong Lu, Martin Krallinger, Kevin B Cohen, W Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S1 (3 October 2011)

Oral presentation   Open Access

The PPI affix dictionary (PPIAD) and BioMethod Lexicon: importance of affixes and tags for recognition of entity mentions and experimental protein interactions

Martin Krallinger, Ashish V Tendulkar, Florian Leitner, Andrew Chatr-aryamontri, Alfonso Valencia BMC Bioinformatics 2010, 11(Suppl 5):O1 (6 October 2010)