Genome Biology

official impact factor 6.89

This article is part of the supplement: The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge

Open Access Highly Access

Overview of BioCreative II gene normalization

Alexander A Morgan, Zhiyong Lu, Xinglong Wang, Aaron M Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, K Bretonnel Cohen and Lynette Hirschman*

Genome Biology 2008, 9(Suppl 2):S3 doi:10.1186/gb-2008-9-s2-s3

Accesses  

  • Last 30 days: 106 accesses
  • Last year: 1543 accesses
  • All time: 11238 accesses

Cited by

BioMed Central: 9 citations

Research   Open Access

Classifying protein-protein interaction articles using word and syntactic features

Sun Kim, W Wilbur BMC Bioinformatics 2011, 12(Suppl 8):S9 (3 October 2011)

Research   Open Access

Soft tagging of overlapping high confidence gene mention variants for cross-species full-text gene normalization

Cheng-Ju Kuo, Maurice HT Ling, Chun-Nan Hsu BMC Bioinformatics 2011, 12(Suppl 8):S6 (3 October 2011)

Research   Open Access

BioCreative III interactive task: an overview

Cecilia N Arighi, Phoebe M Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E Thomas, Luca Toldo, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S4 (3 October 2011)

Research   Open Access

The gene normalization task in BioCreative III

Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illes Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sergio Matos, David Campos, Karin Verspoor, Kevin M Livingston, W Wilbur BMC Bioinformatics 2011, 12(Suppl 8):S2 (3 October 2011)

Research   Open Access

Overview of the BioCreative III Workshop

Cecilia N Arighi, Zhiyong Lu, Martin Krallinger, Kevin B Cohen, W Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H Wu BMC Bioinformatics 2011, 12(Suppl 8):S1 (3 October 2011)

Software   Open Access Highly Accessed

Integrating GPCR-specific information with full text articles

Bas Vroling, David Thorne, Philip McDermott, Teresa K Attwood, Gert Vriend, Steve Pettifer BMC Bioinformatics 2011, 12:362 (12 September 2011)

Research article   Open Access Highly Accessed

Ontology-based Brucella vaccine literature indexing and systematic analysis of gene-vaccine association network

Junguk Hur, Zuoshuang Xiang, Eva L Feldman, Yongqun He BMC Immunology 2011, 12:49 (26 August 2011)

Applying Vaccine Ontology in literature mining enhances the retrieval of related literature, resulting in the generation of a comprehensive co-citation network of genes and vaccines which provides potential valuable opportunities for the development of new vaccines.

Proceedings   Open Access

BIOADI: a machine learning approach to identifying abbreviations and definitions in biological literature

Cheng-Ju Kuo, Maurice HT Ling, Kuan-Ting Lin, Chun-Nan Hsu BMC Bioinformatics 2009, 10(Suppl 15):S7 (3 December 2009)

Research   Open Access

Extraction of human kinase mutations from literature, databases and genotyping studies

Martin Krallinger, Jose MG Izarzugaza, Carlos Rodriguez-Penagos, Alfonso Valencia BMC Bioinformatics 2009, 10(Suppl 8):S1 (27 August 2009)