Table 1

Annotation servers

Team/Group

GM

GN

TX

PPI

Conf

State

Web Page


Hakenberg

+

+

+

+

True

Dynamic

http://alibaba.informatik.hu-berlin.de/bcms/ webcite

Kuo

+

False

Dynamic

http://aiia.iis.sinica.edu.tw/biocreative2.htm webcite

Tsai

+

+

True

Dynamic

http://asqa.iis.sinica.edu.tw/biocreative2/ webcite

Lau

+

True

Dynamic

http://giant.cit.nih.gov/ webcite

Sætre

+

+

+

True

Static

Kim

+

True

Dynamic

http://bi.snu.ac.kr/pie webcite

Baumgartner

+

+

+

False

Dynamic

Haddow

+

+

+

+

True

Static

Ruch

+

+

True

Dynamic

http://129.194.97.165/EAGLtools/ webcite

Özgür

+

True

Static

Luong

+

True

Dynamic

Hoffmann

a

+

+

+

True

Dynamic

http://www.ihop-net.org/ webcite

Totals

6

8

3

9

10

12 teams


List of annotation servers used by the meta-server, plus a Boolean flag determining whether the classifiers use a confidence score (Conf) and the system state (State): dynamic = online system, already capable of delivering content for any PubMed abstract; static = offline system, server in development. The webpage columns provide a link to an online site for a team's annotation system. aiHOP (Hoffmann) delivers GMs, but because of data compatibility issues this is a feature to be added in later versions of the meta-server. GM, gene/protein mention detections; GN, gene/protein normalizations; PPI, protein-protein interaction classification; TX, taxon classifications.

Leitner et al. Genome Biology 2008 9(Suppl 2):S6   doi:10.1186/gb-2008-9-s2-s6

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