Table 12

IPS results: comparison of normalization results on the IPS task test data.

Calculated by interactor

Calculated by article

Calculated by article with interactions


P

R

F

P

R

F

P

R

F


Run 1

0.57

0.12

0.19

0.15

0.13

0.13

0.56

0.46

0.48

Median

0.18

0.25

0.19

0.16

0.28

0.17

0.21

0.39

0.24


'Calculated by interactor' indicates each interactor extracted was given equal weight. 'Calculated by article' means the measure was calculated by averaging over articles. 'Calculated by article with interactions' means that only articles in which at least a single prediction submitted by a team was considered in the calculation. IPS, interaction pair subtask.

Baumgartner et al. Genome Biology 2008 9(Suppl 2):S9   doi:10.1186/gb-2008-9-s2-s9

Open Data