Figure 7.

Summary of the overall performance on biological process terms. The AUC and APR distributions of high level (second level) biological process (BP) terms are plotted for the 'mean' combination of the network_full and the classifier. The results of ten-fold cross-validation and the MouseFunc test set were merged by taking the MouseFunc test set as 11th fold. For each of the high level Gene Ontology (GO) terms, the AUC distribution (left panel) and the APR distribution (right panel) of its descendant annotations in the GO hierarchy are plotted. GO annotations are sorted from top to bottom by median AUC (bold vertical bar). Each box indicates first and third quartile; whiskers indicate minimum and maximum values. The GO terms with ancestor-descendant relationships were merged to the ancestor term to remove redundancy. APR, average precision; AUC, area under the receiver operating characteristic.