Figure 4.

Summary of reconciliation methods. Given a set of probabilistic values obtained from logistic regression (, i ∈ I), and A_i and D_i denoting the set of ancestors and descendants, respectively, of Gene Ontology (GO) term i, we compute reconciled probabilistic predictions p_i using the 11 strategies described in the text. Detailed descriptions of each method are given Additional data file 1. Colored boxes indicate the color that is used to represent this method on all subsequent plots.