|
Summary of data types |
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| Data type |
Description |
BP |
CC |
MF |
|
|
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| Phenotype |
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| MGI |
Mammalian phenotype ontology terms (33) |
1,994 |
2,157 |
1,898 |
| OMIM |
Diseases (2,488) associated with human homologs |
998 |
1,166 |
978 |
| Phylogenetic profile |
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| Inparanoid |
Orthologs across 21 species |
6,131 |
7,092 |
6,556 |
| Biomart |
Orthologs across 18 species |
6,269 |
7,242 |
6,695 |
| Protein domain |
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| Interpro |
Functional sites and domains |
7,131 |
8,027 |
7,603 |
| PfamA |
Protein domains |
6,790 |
7,648 |
7,239 |
| Protein-protein interaction |
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| PPI |
Transferred via orthology from human (OPHID) |
3,273 |
3,690 |
3,509 |
| Gene expression data |
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| Su et al. [9] |
Oligonucleotide arrays (55 tissues) |
6,555 |
7,587 |
7,029 |
| Zhang et al. [7] |
Affymetrix arrays (61 tissues) |
5,097 |
5,716 |
5,447 |
| SAGE |
Tag counts from SAGE library (99% cutoff) |
6,323 |
7,231 |
6,753 |
| Total |
7,968 |
9,005 |
8,427 |
|
|
The table lists the ten data types from [1], along with the number of proteins that are annotated with at least one term of each ontology and for which that data type is available. BP, biological process; CC, cellular component; MF, molecular function. | ||||
Obozinski et al. Genome Biology 2008 9(Suppl 1):S6 doi:10.1186/gb-2008-9-s1-s6 |
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