|
MIPS functional classes used to compare with MRF-NB approach |
|
| Functional categories |
No. of genes annotated |
|
|
|
| Cell cycle and DNA processing |
600 |
| Cell fate |
411 |
| Cell rescue, defense and virulence |
264 |
| Cellular transport and transport mechanisms |
479 |
| Control of cellular organization |
192 |
| Energy |
242 |
| Metabolism |
1,048 |
| Protein fate (folding, modification, destination) |
578 |
| Protein synthesis |
335 |
| Regulation of/interaction with cellular environment |
193 |
| Transcription |
753 |
| Transport facilitation |
306 |
| Others (cellular communication/signal transduction mechanism, or protein activity regulation, or protein with binding function or cofactor requirement (structural or catalytic), or transposable elements, viral and plasmid proteins) |
81 |
| Total |
3,588 |
|
MIPS, Munich Information Center for Protein Sequences; MRF, Markov random field; NB, naïve bayes. | |
Tian et al. Genome Biology 2008 9(Suppl 1):S7 doi:10.1186/gb-2008-9-s1-s7 |
|