Table 2 |
||
|
Pearson correlation coefficients between the levels of histone modification and PSFM score, and REST occupancy |
||
|
Factor |
PSFM scores of DJ-cRE1 |
REST ChIP-Seq reads |
|
|
||
|
H2AK5ac |
-0.119 |
-0.141 |
|
H2AK9ac |
-0.074 |
0.138 |
|
H2BK120ac |
-0.226* |
-0.061 |
|
H2BK12ac |
-0.202* |
-0.101 |
|
H2BK20ac |
-0.220* |
-0.055 |
|
H2BK5ac |
-0.174* |
-0.072 |
|
H3K14ac |
-0.139 |
-0.054 |
|
H3K18ac |
-0.177* |
-0.102 |
|
H3K23ac |
-0.13 |
-0.024 |
|
H3K27ac |
-0.193* |
-0.070 |
|
H3K36ac |
-0.226* |
-0.120 |
|
H3K4ac |
-0.213* |
-0.119 |
|
H3K9ac |
-0.202* |
-0.084 |
|
H4K12ac |
-0.153 |
-0.050 |
|
H4K16ac |
-0.104 |
-0.053 |
|
H4K5ac |
-0.136 |
-0.071 |
|
H4K8ac |
-0.136 |
-0.007 |
|
H4K91ac |
-0.228* |
-0.103 |
|
H2BK5me1 |
0.036 |
0.413* |
|
H3K27me1 |
-0.121 |
-0.018 |
|
H3K27me2 |
-0.075 |
-0.170* |
|
H3K27me3 |
-0.027 |
-0.187* |
|
H3K36me1 |
-0.203* |
0.012 |
|
H3K36me3 |
-0.026 |
-0.108 |
|
H3K4me1 |
-0.059 |
-0.028 |
|
H3K4me2 |
-0.157 |
-0.041 |
|
H3K4me3 |
-0.200* |
-0.093 |
|
H3K79me1 |
-0.125 |
-0.135 |
|
H3K79me2 |
-0.096 |
-0.092 |
|
H3K79me3 |
-0.110 |
-0.044 |
|
H3K9me1 |
-0.147 |
0.052 |
|
H3K9me2 |
0.116 |
0.375* |
|
H3K9me3 |
0.044 |
-0.091 |
|
H3R2me1 |
0.023 |
0.273* |
|
H3R2me2 |
-0.041 |
0.355* |
|
H4K20me1 |
0.081 |
0.418* |
|
H4K20me3 |
0.13 |
0.039 |
|
H4R3me2 |
0.102 |
0.484* |
|
H2AZ |
-0.156 |
-0.086 |
|
PolII |
-0.132 |
0.075 |
|
PSFM score |
- |
0.178* |
|
|
||
|
Significant correlations are marked by an asterisk. |
||
|
Zheng et al. Genome Biology 2009 10:R9 doi:10.1186/gb-2009-10-1-r9 |
||
