Genome Biology

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ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads

Iain MacCallum1, Dariusz Przybylski1, Sante Gnerre1, Joshua Burton1, Ilya Shlyakhter1, Andreas Gnirke1, Joel Malek2,3, Kevin McKernan2, Swati Ranade2,4, Terrance P Shea1, Louise Williams1, Sarah Young1, Chad Nusbaum1 and David B Jaffe1*

Author Affiliations

1 Broad Institute of MIT and Harvard, Charles Street, Cambridge, MA 02141, USA

2 Life Technologies, Cummings Center, Beverly, MA 01915, USA

3 Current address: Department of Medical Genetics, Weill Cornell Medical College in Qatar, 24144 Al-Rayaan St., Doha, Qatar

4 Current address: Pacific Biosciences, Adams Drive, Menlo Park, CA 94025, USA

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Genome Biology 2009, 10:R103 doi:10.1186/gb-2009-10-10-r103

Published: 1 October 2009

Additional files

Additional data file 1:

Tables S1 to S4, Figure S1, and several supplemental explanations.

Format: PDF Size: 236KB Download file

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Additional data file 2:

Table S5.

Format: PDF Size: 70KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data