Table 2

Summary of tag classification into various categories and comparisons

DETs in various comparisons*


Category

Number of DETs

E15.5 R versus C

Adult L versus Ri

E15.5 versus E17.5

E15.5 versus P1.5

P1.5 versus Ad

E versus Ad

Total


Gene

386 (68.8)

25 (56.8)

10 (58.8)

24 (63.2)

16 (44.4)

114 (59.4)

253 (77.1)

442

EST

33 (5.9)

2 (4.5)

2 (11.8)

1 (2.6)

1 (2.8)

9 (4.7)

24 (7.3)

39

Multiple matches

55 (9.8)

9 (20.5)

3 (17.6)

5 (13.2)

4 (11.1)

21(10.9)

23 (7.0)

65

Ambiguous

44 (7.8)

4 (9.1)

2 (11.8)

6 (15.8)

4 (11.1)

14 (7.3)

20 (6.1)

50

No match

43 (7.7)

4 (9.1)

0 (0)

2 (5.3)

11 (30.6)

34 (17.7)

8 (2.4)

59

Total

561

44

17

38

36

192

328

655


Tag classification into various categories and comparisons was based on the mouse genome assembly released in July 2007. Values in parentheses represent the 'percentage' across a column. *Total number of tags for various comparisons is 655 (rather than 561) due to the same tag being statistically significant in more than one comparison. Differentially expressed tags. Ad: adult stage; C: caudal region; E: embryonic day/stage; L: adult left hemisphere; P: postnatal days; R: rostral region; Ri: adult right hemisphere.

Ling et al. Genome Biology 2009 10:R104   doi:10.1186/gb-2009-10-10-r104

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