Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions

doi:10.1186/gb-2009-10-10-r106

Genome Biology

Volume 10
Issue 10

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Corradi N
Haag KL
Pombert JF
Ebert D
Keeling PJ

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Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions

Nicolas Corradi¹ , Karen L Haag²^,3 , Jean-François Pombert¹ , Dieter Ebert²^* and Patrick J Keeling¹^*

¹Canadian Institute for Advanced Research, The Biodiversity Research Centre, University of British Columbia, University Boulevard, Vancouver, BC, V6T 1Z4, Canada

²Universität Basel, Zoologisches Institut, Evolutionsbiologie, Vesalgasse, CH-4051 Basel, Switzerland

³Department of Genetics, UFRGS, Porto Alegre, RS 91501-970, Brazil

author email corresponding author email* Contributed equally

Genome Biology 2009, 10:R106doi:10.1186/gb-2009-10-10-r106


Published:	6 October 2009

Subject areas: Evolution, Genome studies, Molecular biology

Additional files

Additional data file 1:

Enc. cuniculi predicted genes and the putative counterparts identified in O. bayeri.

Format: XLS Size: 253KB Download file

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Additional data file 2:

The 80 O. bayeri proteins with assigned functions and motifs that are absent in Enc. cuniculi.

Format: DOC Size: 77KB Download file

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Additional data file 3:

O. bayeri ORFs and their assignment to functional categories (according to [25]).

Format: XLS Size: 167KB Download file

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Additional data file 4:

Sequences of the six introns identified in O. bayeri.

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Additional data file 5:

Three examples of large gene inserts we identified in otherwise conserved eukaryotic proteins.

Format: EPS Size: 1.6MB Download file

Additional data file 6:

The number of contigs used in this study and their respective sequence coverage.

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Additional data file 7:

Repetitive elements we identified in the O. bayeri genome.

Format: XLS Size: 42KB Download file

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