Research
Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell
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* Corresponding author: Peter von Dassow dassow@sb-roscoff.fr
1 Evolution du Plancton et PaleOceans, Station Biologique de Roscoff, CNRS UPMC UMR7144, 29682 Roscoff, France
2 Information Génomique et Structurale, CNRS - UPR2589, Institut de Microbiologie de la Méditerranée, Parc Scientifique de Luminy - 163 Avenue de Luminy - Case 934, FR- 13288, Marseille cedex 09, France
3 Genoscope, 2 Rue Gaston Crémieux, 91057 Evry, France
Genome Biology 2009, 10:R114 doi:10.1186/gb-2009-10-10-r114
Published: 15 October 2009Additional files
Additional data file 1:
Figures S1 to S15.
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Additional data file 2:
All clusters with component mini-clusters, cDNA clones, and associated EMBL accession numbers.
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Additional data file 3:
Clusters and mini-clusters with read numbers by library, and top homologies in UniProt, Swiss-Prot, KOG, and CDD.
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Additional data file 4:
Clusters predicted by statistical analysis to be 1N-specific, including all orphan clusters and clusters with reads in the 2N library that have P < 0.01 associated with the difference in read number between 1N and 2N libraries.
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Additional data file 5:
Clusters predicted by statistical analysis to be 2N-specific, including all orphan clusters and clusters with reads in the 1N library that have P < 0.01 associated with the difference in read number between 1N and 2N libraries.
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Additional data file 6:
Selected KEGG genomes used for the taxonomic search.
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Additional data file 7:
Tables S1 and S2 list all oligonucleotide primers and a summary of RT-PCR results.
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Additional data file 8:
Detailed description of identification and analysis of flagellar-related homologs.
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Additional data file 9:
Results of automatic queries with C. reinhardtii flagellar-related proteins against E. huxleyi EST clusters, and an analysis of these clusters compared to the KEGG database.
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Additional data file 10:
results of the search of Table 3 of Quinn et al. [44], suspected biomineralization-related transcripts.
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