Table 11 |
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|
E. huxleyi EST clusters related to Ca2+ and H+ transporters |
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|
Cluster ID |
Number of 1N clusters |
Number of 2N clusters |
P-value |
Top Swiss-Prot hit |
E-value |
|
|
|||||
|
Ca2+/H+ antiporter VCX1 and related proteins |
|||||
|
GS00019 |
7 |
1 |
0.020 |
CAX5_ARATH |
2 × 10-66 |
|
GS00304 |
0 |
4 |
0.031 |
CAX2_ARATH |
3 × 10-60 |
|
GS00617 |
3 |
0 |
0.063 |
VCX1_YEAST |
3 × 10-58 |
|
GS00976 |
2 |
1 |
0.313 |
VCX1_YEAST |
3 × 10-31 |
|
GS06500 |
0 |
1 |
0.250 |
CAX3_ORYSJ |
4 × 10-30 |
|
Ca2+ transporting ATPase |
|||||
|
GS07761 |
1 |
0 |
0.250 |
AT2A2_CHICK |
4 × 10-63 |
|
GS01511 |
4 |
5 |
0.377 |
ECA4_ARATH |
7 × 10-31 |
|
GS05702 |
0 |
1 |
0.250 |
ECA4_ARATH |
3 × 10-12 |
|
K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins |
|||||
|
GS05506 |
0 |
2 |
0.125 |
NCKX2_RAT |
5 × 10-24 |
|
GS00463 |
0 |
8 |
0.002 |
NCKXH_DROME |
1 × 10-22 |
|
GS04866 |
2 |
0 |
0.125 |
NCKX_DROME |
2 × 10-22 |
|
GS02609 |
1 |
0 |
0.250 |
NCKX3_HUMAN |
8 × 10-20 |
|
GS00834 |
4 |
3 |
0.364 |
NCKXH_DROME |
2 × 10-18 |
|
GS03656 |
4 |
1 |
0.110 |
NCKX3_MOUSE |
6 × 10-7 |
|
Vacuolar H+-ATPase V0 sector, subunit a |
|||||
|
GS01798 |
2 |
0 |
0.125 |
VPP4_HUMAN |
2 × 10-38 |
|
GS02526 |
1 |
4 |
0.109 |
VPP4_HUMAN |
9 × 10-40 |
|
GS12017 |
0 |
1 |
0.250 |
No hit |
|
|
GS04358 |
1 |
0 |
0.250 |
VATM_DICDI |
2 × 10-30 |
|
GS08326 |
0 |
1 |
0.250 |
No hit |
|
|
Vacuolar H+-ATPase V0 sector, subunit c" |
|||||
|
GS01501 |
4 |
0 |
0.031 |
VATO_YEAST |
4 × 10-47 |
|
Vacuolar H+-ATPase V0 sector, subunit d |
|||||
|
GS00290 |
7 |
5 |
0.291 |
VA0D_DICDI |
1 × 10-126 |
|
Vacuolar H+-ATPase V0 sector, subunit M9.7 (M9.2) |
|||||
|
GS11177 |
0 |
2 |
0.125 |
||
|
Vacuolar H+-ATPase V0 sector, subunits c/c' |
|||||
|
GS03783 |
1 |
0 |
0.250 |
VATL_PLECA |
7 × 10-38 |
|
GS01934 |
3 |
5 |
0.254 |
VATL_PLECA |
4 × 10-38 |
|
Vacuolar H+-ATPase V1 sector, subunit A |
|||||
|
GS01727 |
2 |
5 |
0.144 |
VATA_CYACA |
3 × 10-86 |
|
Vacuolar H+-ATPase V1 sector, subunit B |
|||||
|
GS08492 |
0 |
1 |
0.250 |
VATB_ARATH |
1 × 10-62 |
|
Vacuolar H+-ATPase V1 sector, subunit C |
|||||
|
GS00316 |
6 |
4 |
0.275 |
VATC1_XENTR |
6 × 10-41 |
|
Vacuolar H+-ATPase V1 sector, subunit E |
|||||
|
GS00924 |
1 |
1 |
0.500 |
VATE_MESCR |
1 × 10-21 |
|
Vacuolar H+-ATPase V1 sector, subunit F |
|||||
|
GS09780 |
0 |
4 |
0.031 |
VATF_ARATH |
3 × 10-32 |
|
Vacuolar H+-ATPase V1 sector, subunit H |
|||||
|
GS01820 |
1 |
5 |
0.062 |
VATH_MANSE |
4 × 10-36 |
|
|
|||||
|
Clusters are arranged by KOG hit classification. Clusters in bold were tested by RT-PCR. |
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|
von Dassow et al. Genome Biology 2009 10:R114 doi:10.1186/gb-2009-10-10-r114 |
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