Table 11

E. huxleyi EST clusters related to Ca2+ and H+ transporters

Cluster ID

Number of 1N clusters

Number of 2N clusters

P-value

Top Swiss-Prot hit

E-value


Ca2+/H+ antiporter VCX1 and related proteins

GS00019

7

1

0.020

CAX5_ARATH

2 × 10-66

GS00304

0

4

0.031

CAX2_ARATH

3 × 10-60

GS00617

3

0

0.063

VCX1_YEAST

3 × 10-58

GS00976

2

1

0.313

VCX1_YEAST

3 × 10-31

GS06500

0

1

0.250

CAX3_ORYSJ

4 × 10-30

Ca2+ transporting ATPase

GS07761

1

0

0.250

AT2A2_CHICK

4 × 10-63

GS01511

4

5

0.377

ECA4_ARATH

7 × 10-31

GS05702

0

1

0.250

ECA4_ARATH

3 × 10-12

K+-dependent Ca2+/Na+ exchanger NCKX1 and related proteins

GS05506

0

2

0.125

NCKX2_RAT

5 × 10-24

GS00463

0

8

0.002

NCKXH_DROME

1 × 10-22

GS04866

2

0

0.125

NCKX_DROME

2 × 10-22

GS02609

1

0

0.250

NCKX3_HUMAN

8 × 10-20

GS00834

4

3

0.364

NCKXH_DROME

2 × 10-18

GS03656

4

1

0.110

NCKX3_MOUSE

6 × 10-7

Vacuolar H+-ATPase V0 sector, subunit a

GS01798

2

0

0.125

VPP4_HUMAN

2 × 10-38

GS02526

1

4

0.109

VPP4_HUMAN

9 × 10-40

GS12017

0

1

0.250

No hit

GS04358

1

0

0.250

VATM_DICDI

2 × 10-30

GS08326

0

1

0.250

No hit

Vacuolar H+-ATPase V0 sector, subunit c"

GS01501

4

0

0.031

VATO_YEAST

4 × 10-47

Vacuolar H+-ATPase V0 sector, subunit d

GS00290

7

5

0.291

VA0D_DICDI

1 × 10-126

Vacuolar H+-ATPase V0 sector, subunit M9.7 (M9.2)

GS11177

0

2

0.125

Vacuolar H+-ATPase V0 sector, subunits c/c'

GS03783

1

0

0.250

VATL_PLECA

7 × 10-38

GS01934

3

5

0.254

VATL_PLECA

4 × 10-38

Vacuolar H+-ATPase V1 sector, subunit A

GS01727

2

5

0.144

VATA_CYACA

3 × 10-86

Vacuolar H+-ATPase V1 sector, subunit B

GS08492

0

1

0.250

VATB_ARATH

1 × 10-62

Vacuolar H+-ATPase V1 sector, subunit C

GS00316

6

4

0.275

VATC1_XENTR

6 × 10-41

Vacuolar H+-ATPase V1 sector, subunit E

GS00924

1

1

0.500

VATE_MESCR

1 × 10-21

Vacuolar H+-ATPase V1 sector, subunit F

GS09780

0

4

0.031

VATF_ARATH

3 × 10-32

Vacuolar H+-ATPase V1 sector, subunit H

GS01820

1

5

0.062

VATH_MANSE

4 × 10-36


Clusters are arranged by KOG hit classification. Clusters in bold were tested by RT-PCR.

von Dassow et al. Genome Biology 2009 10:R114   doi:10.1186/gb-2009-10-10-r114

Open Data